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[wip] rust-htslib integration#11

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eharr wants to merge 12 commits intojguhlin:mainjguhlin/minimap2-rs:mainfrom eharr:feat-htslibeharr/minimap2-rs:feat-htslibCopy head branch name to clipboard

+414-23

Commits

Commits on Jan 10, 2023

• chore(lib.rs): apply cargo fix

  eharr

  committed
  250c029

• feat(htslib): [wip] convert Mapping -> bam::Record

  Show description for 44326fc
  eharr

  committed
  44326fc

• Compiles

  jguhlin

  committed
  6b90f08

• Compiles

  jguhlin

  committed
  05893da

• Fmt, fix, update

  jguhlin

  committed
  b175d4e

• Fmt, fix, update

  jguhlin

  committed
  f2bfc94

Commits on Jan 11, 2023

• add missing test file

  eharr

  committed
  21b4897

• build(Cargo.toml): make map-file default feature

  eharr

  committed
  7364af6

Commits on Jan 12, 2023

• WIP

  eharr

  committed
  a5817fd

• test(htslib): acceptance tests sam outout

  Show description for 270be63
  eharr

  committed
  270be63

Commits on Jan 13, 2023

• feat(htslib): add MMIndex stuct to get sequence lengths

  eharr

  committed
  de4b683

Commits on Jan 14, 2023

• feat(htslib): generate sam header from index

  eharr

  committed
  dce1851