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fix in boundary library
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jcopperm committed Nov 8, 2024
1 parent e27c8f4 commit e12723e
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion celltraj/trajectory.py
Original file line number Diff line number Diff line change
Expand Up @@ -3470,7 +3470,7 @@ def get_cellboundary_library(self,frames=None,indcells=None,secretion_rates=None
for iS in frames:
print(f'Extracting boundary library from frame {iS}')
indframe=np.where(self.cells_frameSet==iS)[0]
border_dict=get_border_properties_dict(self,iS,cell_states=cell_states,secretion_rates=secretion_rates,surface_fmask_channels=surface_fmask_channels,surface_states_baseid=surface_states_baseid,border_resolution=border_resolution,vdist_scale=vdist_scale,visual=visual)
border_dict=self.get_border_properties_dict(iS,cell_states=cell_states,secretion_rates=secretion_rates,surface_fmask_channels=surface_fmask_channels,surface_states_baseid=surface_states_baseid,border_resolution=border_resolution,vdist_scale=vdist_scale,visual=visual)
if visual:
plt.show()
indcells_boundary=np.where(np.isin(border_dict['global_index'],indframe))[0]
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