Add type hints and expand tests for cluster_analysis #8
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| on: | |
| push: | |
| pull_request: | |
| types: | |
| - synchronize | |
| env: | |
| # Python minimum version is used for testing xia2 | |
| PYTHON_MINIMUM_VERSION: '3.9' | |
| jobs: | |
| build_test: | |
| name: Build/Test | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu, macOS] | |
| runs-on: ${{ matrix.os }}-latest | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| with: | |
| path: modules/xia2 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_MINIMUM_VERSION }} | |
| - name: Install Base Environment | |
| shell: bash | |
| run: | | |
| wget https://raw.githubusercontent.com/dials/dials/main/installer/bootstrap.py | |
| python bootstrap.py update base --python "${{ env.PYTHON_MINIMUM_VERSION }}" | |
| micromamba/micromamba install -p ./conda_base -c conda-forge -y \ | |
| ninja dials-data pytest-azurepipelines pytest-cov pytest-timeout pytest-md | |
| echo "$(pwd)/conda_base/bin" >> $GITHUB_PATH | |
| - name: Build | |
| env: | |
| CMAKE_GENERATOR: Ninja | |
| run: python bootstrap.py build | |
| - name: Prepare for cache restoration | |
| shell: bash | |
| run: | | |
| set -x | |
| find . -name "dials.data*" | |
| echo "DIALS_DATA_VERSION_FULL=$(dials.data info -v | grep version.full)" >> $GITHUB_ENV | |
| echo "DIALS_DATA_VERSION=$(dials.data info -v | grep version.major_minor)" >> $GITHUB_ENV | |
| echo "DIALS_DATA=${PWD}/data" >> $GITHUB_ENV | |
| echo "CURRENT_WEEK=$(date +W%W)" >> $GITHUB_ENV | |
| echo "TODAY_ISO=$(date +%Y%m%d)" >> $GITHUB_ENV | |
| - name: Restore Cache | |
| uses: actions/cache@v4 | |
| with: | |
| key: ${{ env.CURRENT_WEEK }}-${{ env.DIALS_DATA_VERSION }}-${{ env.TODAY_ISO }}-${{ env.DIALS_DATA_VERSION_FULL }} | |
| restore-keys: | | |
| ${{ env.CURRENT_WEEK }}-${{ env.DIALS_DATA_VERSION }}-${{ env.TODAY_ISO }}- | |
| ${{ env.CURRENT_WEEK }}-${{ env.DIALS_DATA_VERSION }}- | |
| path: ${{ github.workspace }}/data | |
| - name: Run pytest | |
| uses: pavelzw/pytest-action@510c5e90c360a185039bea56ce8b3e7e51a16507 # v2.2.0 | |
| with: | |
| verbose: true | |
| emoji: false | |
| job-summary: true | |
| custom-arguments: modules/xia2 --regression --regression-full --timeout=5400 | |
| click-to-expand: true |