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Do coordinate clustering in multiplex #4

Do coordinate clustering in multiplex

Do coordinate clustering in multiplex #4

Workflow file for this run

on:
push:
pull_request:
types:
- synchronize
env:
# Python minimum version is used for testing xia2
PYTHON_MINIMUM_VERSION: '3.9'
jobs:
build_test:
name: Build/Test
strategy:
fail-fast: false
matrix:
os: [ubuntu, macOS]
runs-on: ${{ matrix.os }}-latest
steps:
- name: Checkout Repository
uses: actions/checkout@v4
with:
path: modules/xia2
- uses: actions/setup-python@v5
with:
python-version: ${{ env.PYTHON_MINIMUM_VERSION }}
- name: Install Base Environment
shell: bash
run: |
wget https://raw.githubusercontent.com/dials/dials/main/installer/bootstrap.py
python bootstrap.py update base --python "${{ env.PYTHON_MINIMUM_VERSION }}"
micromamba/micromamba install -p ./conda_base -c conda-forge -y \
ninja dials-data pytest-azurepipelines pytest-cov pytest-timeout pytest-md
echo "$(pwd)/conda_base/bin" >> $GITHUB_PATH
- name: Build
env:
CMAKE_GENERATOR: Ninja
run: python bootstrap.py build
- name: Prepare for cache restoration
shell: bash
run: |
set -x
find . -name "dials.data*"
echo "DIALS_DATA_VERSION_FULL=$(dials.data info -v | grep version.full)" >> $GITHUB_ENV
echo "DIALS_DATA_VERSION=$(dials.data info -v | grep version.major_minor)" >> $GITHUB_ENV
echo "DIALS_DATA=${PWD}/data" >> $GITHUB_ENV
echo "CURRENT_WEEK=$(date +W%W)" >> $GITHUB_ENV
echo "TODAY_ISO=$(date +%Y%m%d)" >> $GITHUB_ENV
- name: Restore Cache
uses: actions/cache@v4
with:
key: ${{ env.CURRENT_WEEK }}-${{ env.DIALS_DATA_VERSION }}-${{ env.TODAY_ISO }}-${{ env.DIALS_DATA_VERSION_FULL }}
restore-keys: |
${{ env.CURRENT_WEEK }}-${{ env.DIALS_DATA_VERSION }}-${{ env.TODAY_ISO }}-
${{ env.CURRENT_WEEK }}-${{ env.DIALS_DATA_VERSION }}-
path: ${{ github.workspace }}/data
- name: Run pytest
uses: pavelzw/pytest-action@510c5e90c360a185039bea56ce8b3e7e51a16507 # v2.2.0
with:
verbose: true
emoji: false
job-summary: true
custom-arguments: modules/xia2 --regression --regression-full --timeout=5400
click-to-expand: true