Merge branch 'main' into ssx_isigma_filter #1
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| pull_request: | |
| types: | |
| - synchronize | |
| env: | |
| # Python minimum version is used for testing xia2 | |
| PYTHON_MINIMUM_VERSION: '3.9' | |
| jobs: | |
| build_test: | |
| name: Build/Test | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu, macOS] | |
| runs-on: ${{ matrix.os }}-latest | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| with: | |
| path: modules/xia2 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON_MINIMUM_VERSION }} | |
| - name: Install Base Environment | |
| shell: bash | |
| run: | | |
| wget https://raw.githubusercontent.com/dials/dials/main/installer/bootstrap.py | |
| python bootstrap.py update base --python "${{ env.PYTHON_MINIMUM_VERSION }}" | |
| micromamba/micromamba install -p ./conda_base -c conda-forge -y \ | |
| ninja dials-data pytest-azurepipelines pytest-cov pytest-timeout pytest-md | |
| echo "$(pwd)/conda_base/bin" >> $GITHUB_PATH | |
| - name: Build | |
| env: | |
| CMAKE_GENERATOR: Ninja | |
| run: python bootstrap.py build | |
| - name: Prepare for cache restoration | |
| shell: bash | |
| run: | | |
| set -x | |
| find . -name "dials.data*" | |
| echo "DIALS_DATA_VERSION_FULL=$(dials.data info -v | grep version.full)" >> $GITHUB_ENV | |
| echo "DIALS_DATA_VERSION=$(dials.data info -v | grep version.major_minor)" >> $GITHUB_ENV | |
| echo "DIALS_DATA=${PWD}/data" >> $GITHUB_ENV | |
| echo "CURRENT_WEEK=$(date +W%W)" >> $GITHUB_ENV | |
| echo "TODAY_ISO=$(date +%Y%m%d)" >> $GITHUB_ENV | |
| - name: Restore Cache | |
| uses: actions/cache@v4 | |
| with: | |
| key: ${{ env.CURRENT_WEEK }}-${{ env.DIALS_DATA_VERSION }}-${{ env.TODAY_ISO }}-${{ env.DIALS_DATA_VERSION_FULL }} | |
| restore-keys: | | |
| ${{ env.CURRENT_WEEK }}-${{ env.DIALS_DATA_VERSION }}-${{ env.TODAY_ISO }}- | |
| ${{ env.CURRENT_WEEK }}-${{ env.DIALS_DATA_VERSION }}- | |
| path: ${{ github.workspace }}/data | |
| - name: Run pytest | |
| uses: pavelzw/pytest-action@510c5e90c360a185039bea56ce8b3e7e51a16507 # v2.2.0 | |
| with: | |
| verbose: true | |
| emoji: false | |
| job-summary: true | |
| custom-arguments: modules/xia2 --regression --regression-full --timeout=5400 | |
| click-to-expand: true |