Add pipinstall.sh to allowlist_externals #243
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| name: build | |
| on: | |
| push: | |
| pull_request: | |
| jobs: | |
| forward: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| include: | |
| - exp: "offline_exf_seaice" | |
| - exp: "global_ocean.cs32x15" | |
| - exp: "tutorial_deep_convection" | |
| - exp: "aim.5l_cs" | |
| - exp: "isomip" | |
| - exp: "global_ocean.90x40x15" | |
| - exp: "tutorial_plume_on_slope" | |
| - exp: "tutorial_advection_in_gyre" | |
| - exp: "hs94.cs-32x32x5" | |
| - exp: "tutorial_global_oce_biogeo" | |
| - exp: "tutorial_global_oce_in_p" | |
| - exp: "tutorial_cfc_offline" | |
| continue-on-error: true | |
| steps: | |
| - name: Checkout | |
| uses: actions/[email protected] | |
| - name: Get a docker image and set it running | |
| run: | | |
| docker pull oliverjahn/testreport-images:ubuntu_18_04_villon | |
| docker run -v `pwd`:/MITgcm --name ubuntu_18_04-testreport -t -d oliverjahn/testreport-images:ubuntu_18_04_villon /bin/bash | |
| - name: Run a test | |
| env: | |
| MITGCM_EXP: ${{ matrix.exp }} | |
| run: | | |
| . tools/ci/runtr.sh | |
| - name: Upload diagstats | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: diagstats | |
| path: verification/*/*run*/*StDiag* | |
| if-no-files-found: ignore | |
| - name: Upload mds output | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: mds | |
| path: verification/global_ocean.90x40x15/run/pickup.ckptA* | |
| if-no-files-found: ignore | |
| - name: Upload mnc output | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: mnc | |
| path: verification/*/*run*/mnc_test_*/*.nc | |
| if-no-files-found: ignore | |
| python: | |
| needs: forward | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python: [2.7, 3.5, 3.6, 3.7, 3.8, 3.9] | |
| include: | |
| - python: 2.7 | |
| env: py27 | |
| - python: 3.5 | |
| env: py35 | |
| - python: 3.6 | |
| env: py36 | |
| - python: 3.7 | |
| env: py37 | |
| - python: 3.8 | |
| env: py38 | |
| - python: 3.9 | |
| env: py39 | |
| continue-on-error: true | |
| steps: | |
| - name: Checkout | |
| uses: actions/[email protected] | |
| - name: Setup Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install Tox and other packages | |
| run: | | |
| pip install --upgrade pip | |
| pip install tox | |
| - name: Install netcdf tools | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get -qq install netcdf-bin | |
| - name: Download diagstats output | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: diagstats | |
| path: utils/python/MITgcmutils/diagstats | |
| - name: Download mds output | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: mds | |
| path: utils/python/MITgcmutils/tests/data/global_ocean.90x40x15 | |
| - name: Download mnc output | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: mnc | |
| path: utils/python/MITgcmutils/tests/data | |
| - name: Create download directories | |
| run: mkdir -p baseline_images data/llc90 data/aste data/eccov3 | |
| working-directory: utils/python/MITgcmutils/tests | |
| - name: Download baseline images | |
| uses: wei/[email protected] | |
| with: | |
| args: https://engaging-web.mit.edu/~jahn/MITgcmutils/baseline_images/{cs_pcol,cs_pcol_sphere,cs_pcol_sphere_pre330,llc_contour,llc_contourf,llc_pcol,llc_pcol_basemap,llc_pcol_stere,llc_pcol_xg}.png -o utils/python/MITgcmutils/tests/baseline_images/#1.png | |
| - name: Download mds test data | |
| uses: wei/[email protected] | |
| with: | |
| args: https://engaging-web.mit.edu/~jahn/MITgcmutils/mds/llc90/{Eta.0000000008,hFacC,XC,XG,YC,YG}.{data,meta} -o utils/python/MITgcmutils/tests/data/llc90/#1.#2 | |
| - name: Download aste test data | |
| uses: wei/[email protected] | |
| with: | |
| args: https://engaging-web.mit.edu/~jahn/MITgcmutils/mnc/aste/grid.t0{01,02,04,05,07,08,10,11,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,36,37,38,39,41,42,43,44,45}.nc -o utils/python/MITgcmutils/tests/data/aste/grid.t0#1.nc | |
| - name: Download eccov3 test data | |
| uses: wei/[email protected] | |
| with: | |
| args: https://engaging-web.mit.edu/~jahn/MITgcmutils/mnc/eccov3/dic_tave.0000025920.t[001-032].nc -o utils/python/MITgcmutils/tests/data/eccov3/dic_tave.0000025920.t#1.nc | |
| - name: Run Tox | |
| run: tox -e ${{ matrix.env }} | |
| working-directory: utils/python/MITgcmutils | |
| - name: Run scripts | |
| run: tests/run-scripts ${{ matrix.env }} | |
| working-directory: utils/python/MITgcmutils | |
| - name: Upload gluemncbig output | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: gluemncbig | |
| path: utils/python/MITgcmutils/*.nc | |
| if: ${{ always() }} | |
| openad: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| include: | |
| - exp: "global_ocean.90x40x15" | |
| continue-on-error: true | |
| steps: | |
| - name: Checkout | |
| uses: actions/[email protected] | |
| - name: Get a docker image and set it running | |
| run: | | |
| docker pull mitgcm/mitgcm-openad-test:centos-test | |
| docker run -i -t -v `pwd`:/MITgcm -d --name openad-testing --ulimit stack=-1:-1 --rm mitgcm/mitgcm-openad-test:centos-test /bin/bash | |
| - name: Run testreport | |
| env: | |
| MITGCM_EXP: ${{ matrix.exp }} | |
| MITGCM_DECMD: "docker exec -i openad-testing bash -lc" | |
| MITGCM_TROPT: "-oad -devel -of=../tools/build_options/linux_amd64_gfortran -match 14" | |
| MITGCM_INPUT_DIR_PAT: '/input_oad.*' | |
| run: | | |
| . tools/ci/runtr.sh | |
| openad-other: | |
| runs-on: ubuntu-latest | |
| if: ${{ contains(github.event.pull_request.labels.*.name, 'adjoint') }} | |
| strategy: | |
| matrix: | |
| include: | |
| - exp: "global_oce_latlon" | |
| - exp: "halfpipe_streamice" | |
| - exp: "hs94.1x64x5" | |
| - exp: "isomip" | |
| - exp: "tutorial_global_oce_biogeo" | |
| - exp: "tutorial_global_oce_optim" | |
| - exp: "tutorial_tracer_adjsens" | |
| continue-on-error: true | |
| steps: | |
| - name: Checkout | |
| uses: actions/[email protected] | |
| - name: Get a docker image and set it running | |
| run: | | |
| docker pull mitgcm/mitgcm-openad-test:centos-test | |
| docker run -i -t -v `pwd`:/MITgcm -d --name openad-testing --ulimit stack=-1:-1 --rm mitgcm/mitgcm-openad-test:centos-test /bin/bash | |
| - name: Run testreport | |
| env: | |
| MITGCM_EXP: ${{ matrix.exp }} | |
| MITGCM_DECMD: "docker exec -i openad-testing bash -lc" | |
| MITGCM_TROPT: "-oad -devel -of=../tools/build_options/linux_amd64_gfortran -match 14" | |
| MITGCM_INPUT_DIR_PAT: '/input_oad.*' | |
| run: | | |
| . tools/ci/runtr.sh | |
| doc_html: | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| steps: | |
| - name: Checkout | |
| uses: actions/[email protected] | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.11 | |
| - name: install dependencies | |
| run: tools/ci/install_doc_dependencies.sh | |
| - name: build docs | |
| run: | | |
| cd doc | |
| sphinx-build -Wa -b html -d _build_doctrees . _build/html | |
| doc_latex: | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| steps: | |
| - name: Checkout | |
| uses: actions/[email protected] | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.11 | |
| - name: install dependencies | |
| run: tools/ci/install_doc_dependencies.sh | |
| - name: build docs | |
| run: | | |
| cd doc | |
| make clean latexpdf LATEXOPTS="-interaction=nonstopmode -halt-on-error" |