MerckEDA

Data Science Discovery - UC Berkeley

Merck: Benchmark dataset generation for discovery biologics

Malavikha Sudarshan, Jackson Lukas, Jinglan (Cheryl) Liu

Name		Name	Last commit message	Last commit date
Latest commit History 141 Commits
.ipynb_checkpoints		.ipynb_checkpoints
.jupyter		.jupyter
Desktop		Desktop
EmbedTest		EmbedTest
__pycache__		__pycache__
datasets		datasets
.DS_Store		.DS_Store
Embedtest.py		Embedtest.py
Merck-EDA.zip		Merck-EDA.zip
MerckOHEJackson.ipynb		MerckOHEJackson.ipynb
OASDBDesc.ipynb		OASDBDesc.ipynb
OASDBDesc.py		OASDBDesc.py
PCAwithClass.ipynb		PCAwithClass.ipynb
README.md		README.md
bulk_download.sh		bulk_download.sh
cheryl_test.ipynb		cheryl_test.ipynb
clustering and PCA.ipynb		clustering and PCA.ipynb
embedding_and_PCA.py		embedding_and_PCA.py
encode with class.ipynb		encode with class.ipynb
mmseq2Merck.py		mmseq2Merck.py
one_hot encode and physiochemical encode and cluster.ipynb		one_hot encode and physiochemical encode and cluster.ipynb
one_hot encode and physiochemical encode.ipynb		one_hot encode and physiochemical encode.ipynb
one_hot encode.ipynb		one_hot encode.ipynb
sampled_df.csv		sampled_df.csv

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