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ispyb-ejb/db/scripts/ahead/2017_11_24_DataCollectionSummary_view.sql
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| insert into `pydb`.SchemaStatus (scriptName, schemaStatus) values ('2017_11_24_DataCollectionSummary_view.sql','ONGOING'); | ||
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| USE `pydb`; | ||
| CREATE | ||
| OR REPLACE ALGORITHM = MERGE | ||
| DEFINER = `pxadmin`@`%` | ||
| SQL SECURITY DEFINER | ||
| VIEW `pydb`.`v_datacollection_summary` AS | ||
| SELECT | ||
| `pydb`.`DataCollectionGroup`.`dataCollectionGroupId` AS `DataCollectionGroup_dataCollectionGroupId`, | ||
| `pydb`.`DataCollectionGroup`.`blSampleId` AS `DataCollectionGroup_blSampleId`, | ||
| `pydb`.`DataCollectionGroup`.`sessionId` AS `DataCollectionGroup_sessionId`, | ||
| `pydb`.`DataCollectionGroup`.`workflowId` AS `DataCollectionGroup_workflowId`, | ||
| `pydb`.`DataCollectionGroup`.`experimentType` AS `DataCollectionGroup_experimentType`, | ||
| `pydb`.`DataCollectionGroup`.`startTime` AS `DataCollectionGroup_startTime`, | ||
| `pydb`.`DataCollectionGroup`.`endTime` AS `DataCollectionGroup_endTime`, | ||
| `pydb`.`DataCollectionGroup`.`comments` AS `DataCollectionGroup_comments`, | ||
| `pydb`.`DataCollectionGroup`.`actualSampleBarcode` AS `DataCollectionGroup_actualSampleBarcode`, | ||
| `pydb`.`DataCollectionGroup`.`xtalSnapshotFullPath` AS `DataCollectionGroup_xtalSnapshotFullPath`, | ||
| `pydb`.`DataCollectionGroup`.`crystalClass` AS `DataCollectionGroup_crystalClass`, | ||
| `pydb`.`BLSample`.`blSampleId` AS `BLSample_blSampleId`, | ||
| `pydb`.`BLSample`.`crystalId` AS `BLSample_crystalId`, | ||
| `pydb`.`BLSample`.`name` AS `BLSample_name`, | ||
| `pydb`.`BLSample`.`code` AS `BLSample_code`, | ||
| `pydb`.`BLSample`.`location` AS `BLSample_location`, | ||
| `pydb`.`BLSample`.`blSampleStatus` AS `BLSample_blSampleStatus`, | ||
| `pydb`.`BLSample`.`comments` AS `BLSample_comments`, | ||
| `pydb`.`Container`.`containerId` AS `Container_containerId`, | ||
| `pydb`.`BLSession`.`sessionId` AS `BLSession_sessionId`, | ||
| `pydb`.`BLSession`.`proposalId` AS `BLSession_proposalId`, | ||
| `pydb`.`BLSession`.`protectedData` AS `BLSession_protectedData`, | ||
| `pydb`.`Dewar`.`dewarId` AS `Dewar_dewarId`, | ||
| `pydb`.`Dewar`.`code` AS `Dewar_code`, | ||
| `pydb`.`Dewar`.`storageLocation` AS `Dewar_storageLocation`, | ||
| `pydb`.`Container`.`containerType` AS `Container_containerType`, | ||
| `pydb`.`Container`.`code` AS `Container_code`, | ||
| `pydb`.`Container`.`capacity` AS `Container_capacity`, | ||
| `pydb`.`Container`.`beamlineLocation` AS `Container_beamlineLocation`, | ||
| `pydb`.`Container`.`sampleChangerLocation` AS `Container_sampleChangerLocation`, | ||
| `pydb`.`Protein`.`proteinId` AS `Protein_proteinId`, | ||
| `pydb`.`Protein`.`name` AS `Protein_name`, | ||
| `pydb`.`Protein`.`acronym` AS `Protein_acronym`, | ||
| `pydb`.`DataCollection`.`dataCollectionId` AS `DataCollection_dataCollectionId`, | ||
| `pydb`.`DataCollection`.`dataCollectionGroupId` AS `DataCollection_dataCollectionGroupId`, | ||
| `pydb`.`DataCollection`.`startTime` AS `DataCollection_startTime`, | ||
| `pydb`.`DataCollection`.`endTime` AS `DataCollection_endTime`, | ||
| `pydb`.`DataCollection`.`runStatus` AS `DataCollection_runStatus`, | ||
| `pydb`.`DataCollection`.`numberOfImages` AS `DataCollection_numberOfImages`, | ||
| `pydb`.`DataCollection`.`startImageNumber` AS `DataCollection_startImageNumber`, | ||
| `pydb`.`DataCollection`.`numberOfPasses` AS `DataCollection_numberOfPasses`, | ||
| `pydb`.`DataCollection`.`exposureTime` AS `DataCollection_exposureTime`, | ||
| `pydb`.`DataCollection`.`imageDirectory` AS `DataCollection_imageDirectory`, | ||
| `pydb`.`DataCollection`.`wavelength` AS `DataCollection_wavelength`, | ||
| `pydb`.`DataCollection`.`resolution` AS `DataCollection_resolution`, | ||
| `pydb`.`DataCollection`.`detectorDistance` AS `DataCollection_detectorDistance`, | ||
| `pydb`.`DataCollection`.`xBeam` AS `DataCollection_xBeam`, | ||
| `pydb`.`DataCollection`.`transmission` AS `transmission`, | ||
| `pydb`.`DataCollection`.`yBeam` AS `DataCollection_yBeam`, | ||
| `pydb`.`DataCollection`.`imagePrefix` AS `DataCollection_imagePrefix`, | ||
| `pydb`.`DataCollection`.`comments` AS `DataCollection_comments`, | ||
| `pydb`.`DataCollection`.`xtalSnapshotFullPath1` AS `DataCollection_xtalSnapshotFullPath1`, | ||
| `pydb`.`DataCollection`.`xtalSnapshotFullPath2` AS `DataCollection_xtalSnapshotFullPath2`, | ||
| `pydb`.`DataCollection`.`xtalSnapshotFullPath3` AS `DataCollection_xtalSnapshotFullPath3`, | ||
| `pydb`.`DataCollection`.`xtalSnapshotFullPath4` AS `DataCollection_xtalSnapshotFullPath4`, | ||
| `pydb`.`DataCollection`.`phiStart` AS `DataCollection_phiStart`, | ||
| `pydb`.`DataCollection`.`kappaStart` AS `DataCollection_kappaStart`, | ||
| `pydb`.`DataCollection`.`omegaStart` AS `DataCollection_omegaStart`, | ||
| `pydb`.`DataCollection`.`flux` AS `DataCollection_flux`, | ||
| `pydb`.`DataCollection`.`flux_end` AS `DataCollection_flux_end`, | ||
| `pydb`.`DataCollection`.`resolutionAtCorner` AS `DataCollection_resolutionAtCorner`, | ||
| `pydb`.`DataCollection`.`bestWilsonPlotPath` AS `DataCollection_bestWilsonPlotPath`, | ||
| `pydb`.`DataCollection`.`dataCollectionNumber` AS `DataCollection_dataCollectionNumber`, | ||
| `pydb`.`DataCollection`.`axisRange` AS `DataCollection_axisRange`, | ||
| `pydb`.`DataCollection`.`axisStart` AS `DataCollection_axisStart`, | ||
| `pydb`.`DataCollection`.`axisEnd` AS `DataCollection_axisEnd`, | ||
| `pydb`.`DataCollection`.`rotationAxis` AS `DataCollection_rotationAxis`, | ||
| `pydb`.`DataCollection`.`undulatorGap1` AS `DataCollection_undulatorGap1`, | ||
| `pydb`.`DataCollection`.`undulatorGap2` AS `DataCollection_undulatorGap2`, | ||
| `pydb`.`DataCollection`.`undulatorGap3` AS `DataCollection_undulatorGap3`, | ||
| `pydb`.`DataCollection`.`beamSizeAtSampleX` AS `beamSizeAtSampleX`, | ||
| `pydb`.`DataCollection`.`beamSizeAtSampleY` AS `beamSizeAtSampleY`, | ||
| `pydb`.`DataCollection`.`slitGapVertical` AS `DataCollection_slitGapVertical`, | ||
| `pydb`.`DataCollection`.`slitGapHorizontal` AS `DataCollection_slitGapHorizontal`, | ||
| `pydb`.`DataCollection`.`beamShape` AS `DataCollection_beamShape`, | ||
| `pydb`.`DataCollection`.`voltage` AS `DataCollection_voltage`, | ||
| `pydb`.`Workflow`.`workflowTitle` AS `Workflow_workflowTitle`, | ||
| `pydb`.`Workflow`.`workflowType` AS `Workflow_workflowType`, | ||
| `pydb`.`Workflow`.`status` AS `Workflow_status`, | ||
| `pydb`.`Workflow`.`workflowId` AS `Workflow_workflowId`, | ||
| `v_datacollection_summary_autoprocintegration`.`AutoProcIntegration_dataCollectionId` AS `AutoProcIntegration_dataCollectionId`, | ||
| `v_datacollection_summary_autoprocintegration`.`autoProcScalingId` AS `autoProcScalingId`, | ||
| `v_datacollection_summary_autoprocintegration`.`cell_a` AS `cell_a`, | ||
| `v_datacollection_summary_autoprocintegration`.`cell_b` AS `cell_b`, | ||
| `v_datacollection_summary_autoprocintegration`.`cell_c` AS `cell_c`, | ||
| `v_datacollection_summary_autoprocintegration`.`cell_alpha` AS `cell_alpha`, | ||
| `v_datacollection_summary_autoprocintegration`.`cell_beta` AS `cell_beta`, | ||
| `v_datacollection_summary_autoprocintegration`.`cell_gamma` AS `cell_gamma`, | ||
| `v_datacollection_summary_autoprocintegration`.`anomalous` AS `anomalous`, | ||
| `v_datacollection_summary_autoprocintegration`.`scalingStatisticsType` AS `scalingStatisticsType`, | ||
| `v_datacollection_summary_autoprocintegration`.`resolutionLimitHigh` AS `resolutionLimitHigh`, | ||
| `v_datacollection_summary_autoprocintegration`.`resolutionLimitLow` AS `resolutionLimitLow`, | ||
| `v_datacollection_summary_autoprocintegration`.`completeness` AS `completeness`, | ||
| `v_datacollection_summary_autoprocintegration`.`AutoProc_spaceGroup` AS `AutoProc_spaceGroup`, | ||
| `v_datacollection_summary_autoprocintegration`.`autoProcId` AS `autoProcId`, | ||
| `v_datacollection_summary_autoprocintegration`.`rMerge` AS `rMerge`, | ||
| `v_datacollection_summary_autoprocintegration`.`AutoProcIntegration_autoProcIntegrationId` AS `AutoProcIntegration_autoProcIntegrationId`, | ||
| `v_datacollection_summary_autoprocintegration`.`v_datacollection_summary_autoprocintegration_processingPrograms` AS `AutoProcProgram_processingPrograms`, | ||
| `v_datacollection_summary_autoprocintegration`.`v_datacollection_summary_autoprocintegration_processingStatus` AS `AutoProcProgram_processingStatus`, | ||
| `v_datacollection_summary_autoprocintegration`.`AutoProcProgram_autoProcProgramId` AS `AutoProcProgram_autoProcProgramId`, | ||
| `v_datacollection_summary_screening`.`Screening_screeningId` AS `Screening_screeningId`, | ||
| `v_datacollection_summary_screening`.`Screening_dataCollectionId` AS `Screening_dataCollectionId`, | ||
| `v_datacollection_summary_screening`.`Screening_dataCollectionGroupId` AS `Screening_dataCollectionGroupId`, | ||
| `v_datacollection_summary_screening`.`ScreeningOutput_strategySuccess` AS `ScreeningOutput_strategySuccess`, | ||
| `v_datacollection_summary_screening`.`ScreeningOutput_indexingSuccess` AS `ScreeningOutput_indexingSuccess`, | ||
| `v_datacollection_summary_screening`.`ScreeningOutput_rankingResolution` AS `ScreeningOutput_rankingResolution`, | ||
| `v_datacollection_summary_screening`.`ScreeningOutput_mosaicity` AS `ScreeningOutput_mosaicity`, | ||
| `v_datacollection_summary_screening`.`ScreeningOutputLattice_spaceGroup` AS `ScreeningOutputLattice_spaceGroup`, | ||
| `v_datacollection_summary_screening`.`ScreeningOutputLattice_unitCell_a` AS `ScreeningOutputLattice_unitCell_a`, | ||
| `v_datacollection_summary_screening`.`ScreeningOutputLattice_unitCell_b` AS `ScreeningOutputLattice_unitCell_b`, | ||
| `v_datacollection_summary_screening`.`ScreeningOutputLattice_unitCell_c` AS `ScreeningOutputLattice_unitCell_c`, | ||
| `v_datacollection_summary_screening`.`ScreeningOutputLattice_unitCell_alpha` AS `ScreeningOutputLattice_unitCell_alpha`, | ||
| `v_datacollection_summary_screening`.`ScreeningOutputLattice_unitCell_beta` AS `ScreeningOutputLattice_unitCell_beta`, | ||
| `v_datacollection_summary_screening`.`ScreeningOutputLattice_unitCell_gamma` AS `ScreeningOutputLattice_unitCell_gamma`, | ||
| `v_datacollection_summary_screening`.`ScreeningOutput_totalExposureTime` AS `ScreeningOutput_totalExposureTime`, | ||
| `v_datacollection_summary_screening`.`ScreeningOutput_totalRotationRange` AS `ScreeningOutput_totalRotationRange`, | ||
| `v_datacollection_summary_screening`.`ScreeningOutput_totalNumberOfImages` AS `ScreeningOutput_totalNumberOfImages`, | ||
| `v_datacollection_summary_screening`.`ScreeningStrategySubWedge_exposureTime` AS `ScreeningStrategySubWedge_exposureTime`, | ||
| `v_datacollection_summary_screening`.`ScreeningStrategySubWedge_transmission` AS `ScreeningStrategySubWedge_transmission`, | ||
| `v_datacollection_summary_screening`.`ScreeningStrategySubWedge_oscillationRange` AS `ScreeningStrategySubWedge_oscillationRange`, | ||
| `v_datacollection_summary_screening`.`ScreeningStrategySubWedge_numberOfImages` AS `ScreeningStrategySubWedge_numberOfImages`, | ||
| `v_datacollection_summary_screening`.`ScreeningStrategySubWedge_multiplicity` AS `ScreeningStrategySubWedge_multiplicity`, | ||
| `v_datacollection_summary_screening`.`ScreeningStrategySubWedge_completeness` AS `ScreeningStrategySubWedge_completeness`, | ||
| `pydb`.`Shipping`.`shippingId` AS `Shipping_shippingId`, | ||
| `pydb`.`Shipping`.`shippingName` AS `Shipping_shippingName`, | ||
| `pydb`.`Shipping`.`shippingStatus` AS `Shipping_shippingStatus`, | ||
| `pydb`.`DiffractionPlan`.`diffractionPlanId` AS `diffractionPlanId`, | ||
| `pydb`.`DiffractionPlan`.`experimentKind` AS `experimentKind`, | ||
| `pydb`.`DiffractionPlan`.`observedResolution` AS `observedResolution`, | ||
| `pydb`.`DiffractionPlan`.`minimalResolution` AS `minimalResolution`, | ||
| `pydb`.`DiffractionPlan`.`exposureTime` AS `exposureTime`, | ||
| `pydb`.`DiffractionPlan`.`oscillationRange` AS `oscillationRange`, | ||
| `pydb`.`DiffractionPlan`.`maximalResolution` AS `maximalResolution`, | ||
| `pydb`.`DiffractionPlan`.`screeningResolution` AS `screeningResolution`, | ||
| `pydb`.`DiffractionPlan`.`radiationSensitivity` AS `radiationSensitivity`, | ||
| `pydb`.`DiffractionPlan`.`anomalousScatterer` AS `anomalousScatterer`, | ||
| `pydb`.`DiffractionPlan`.`preferredBeamSizeX` AS `preferredBeamSizeX`, | ||
| `pydb`.`DiffractionPlan`.`preferredBeamSizeY` AS `preferredBeamSizeY`, | ||
| `pydb`.`DiffractionPlan`.`preferredBeamDiameter` AS `preferredBeamDiameter`, | ||
| `pydb`.`DiffractionPlan`.`comments` AS `DiffractipnPlan_comments`, | ||
| `pydb`.`DiffractionPlan`.`aimedCompleteness` AS `aimedCompleteness`, | ||
| `pydb`.`DiffractionPlan`.`aimedIOverSigmaAtHighestRes` AS `aimedIOverSigmaAtHighestRes`, | ||
| `pydb`.`DiffractionPlan`.`aimedMultiplicity` AS `aimedMultiplicity`, | ||
| `pydb`.`DiffractionPlan`.`aimedResolution` AS `aimedResolution`, | ||
| `pydb`.`DiffractionPlan`.`anomalousData` AS `anomalousData`, | ||
| `pydb`.`DiffractionPlan`.`complexity` AS `complexity`, | ||
| `pydb`.`DiffractionPlan`.`estimateRadiationDamage` AS `estimateRadiationDamage`, | ||
| `pydb`.`DiffractionPlan`.`forcedSpaceGroup` AS `forcedSpaceGroup`, | ||
| `pydb`.`DiffractionPlan`.`requiredCompleteness` AS `requiredCompleteness`, | ||
| `pydb`.`DiffractionPlan`.`requiredMultiplicity` AS `requiredMultiplicity`, | ||
| `pydb`.`DiffractionPlan`.`requiredResolution` AS `requiredResolution`, | ||
| `pydb`.`DiffractionPlan`.`strategyOption` AS `strategyOption`, | ||
| `pydb`.`DiffractionPlan`.`kappaStrategyOption` AS `kappaStrategyOption`, | ||
| `pydb`.`DiffractionPlan`.`numberOfPositions` AS `numberOfPositions`, | ||
| `pydb`.`DiffractionPlan`.`minDimAccrossSpindleAxis` AS `minDimAccrossSpindleAxis`, | ||
| `pydb`.`DiffractionPlan`.`maxDimAccrossSpindleAxis` AS `maxDimAccrossSpindleAxis`, | ||
| `pydb`.`DiffractionPlan`.`radiationSensitivityBeta` AS `radiationSensitivityBeta`, | ||
| `pydb`.`DiffractionPlan`.`radiationSensitivityGamma` AS `radiationSensitivityGamma`, | ||
| `pydb`.`DiffractionPlan`.`minOscWidth` AS `minOscWidth`, | ||
| `pydb`.`Detector`.`detectorType` AS `Detector_detectorType`, | ||
| `pydb`.`Detector`.`detectorManufacturer` AS `Detector_detectorManufacturer`, | ||
| `pydb`.`Detector`.`detectorModel` AS `Detector_detectorModel`, | ||
| `pydb`.`Detector`.`detectorPixelSizeHorizontal` AS `Detector_detectorPixelSizeHorizontal`, | ||
| `pydb`.`Detector`.`detectorPixelSizeVertical` AS `Detector_detectorPixelSizeVertical`, | ||
| `pydb`.`Detector`.`detectorSerialNumber` AS `Detector_detectorSerialNumber`, | ||
| `pydb`.`Detector`.`detectorDistanceMin` AS `Detector_detectorDistanceMin`, | ||
| `pydb`.`Detector`.`detectorDistanceMax` AS `Detector_detectorDistanceMax`, | ||
| `pydb`.`Detector`.`trustedPixelValueRangeLower` AS `Detector_trustedPixelValueRangeLower`, | ||
| `pydb`.`Detector`.`trustedPixelValueRangeUpper` AS `Detector_trustedPixelValueRangeUpper`, | ||
| `pydb`.`Detector`.`sensorThickness` AS `Detector_sensorThickness`, | ||
| `pydb`.`Detector`.`overload` AS `Detector_overload`, | ||
| `pydb`.`Detector`.`XGeoCorr` AS `Detector_XGeoCorr`, | ||
| `pydb`.`Detector`.`YGeoCorr` AS `Detector_YGeoCorr`, | ||
| `pydb`.`Detector`.`detectorMode` AS `Detector_detectorMode`, | ||
| `pydb`.`BeamLineSetup`.`undulatorType1` AS `BeamLineSetup_undulatorType1`, | ||
| `pydb`.`BeamLineSetup`.`undulatorType2` AS `BeamLineSetup_undulatorType2`, | ||
| `pydb`.`BeamLineSetup`.`undulatorType3` AS `BeamLineSetup_undulatorType3`, | ||
| `pydb`.`BeamLineSetup`.`synchrotronName` AS `BeamLineSetup_synchrotronName`, | ||
| `pydb`.`BeamLineSetup`.`synchrotronMode` AS `BeamLineSetup_synchrotronMode`, | ||
| `pydb`.`BeamLineSetup`.`polarisation` AS `BeamLineSetup_polarisation`, | ||
| `pydb`.`BeamLineSetup`.`focusingOptic` AS `BeamLineSetup_focusingOptic`, | ||
| `pydb`.`BeamLineSetup`.`beamDivergenceHorizontal` AS `BeamLineSetup_beamDivergenceHorizontal`, | ||
| `pydb`.`BeamLineSetup`.`beamDivergenceVertical` AS `BeamLineSetup_beamDivergenceVertical`, | ||
| `pydb`.`BeamLineSetup`.`monochromatorType` AS `BeamLineSetup_monochromatorType` | ||
| FROM | ||
| ((((((((((((((`pydb`.`DataCollectionGroup` | ||
| LEFT JOIN `pydb`.`DataCollection` ON (((`pydb`.`DataCollection`.`dataCollectionGroupId` = `pydb`.`DataCollectionGroup`.`dataCollectionGroupId`) | ||
| AND (`pydb`.`DataCollection`.`dataCollectionId` = (SELECT | ||
| MAX(`dc2`.`dataCollectionId`) | ||
| FROM | ||
| `pydb`.`DataCollection` `dc2` | ||
| WHERE | ||
| (`dc2`.`dataCollectionGroupId` = `pydb`.`DataCollectionGroup`.`dataCollectionGroupId`)))))) | ||
| LEFT JOIN `pydb`.`BLSession` ON ((`pydb`.`BLSession`.`sessionId` = `pydb`.`DataCollectionGroup`.`sessionId`))) | ||
| LEFT JOIN `pydb`.`BeamLineSetup` ON ((`pydb`.`BeamLineSetup`.`beamLineSetupId` = `pydb`.`BLSession`.`beamLineSetupId`))) | ||
| LEFT JOIN `pydb`.`Detector` ON ((`pydb`.`Detector`.`detectorId` = `pydb`.`DataCollection`.`detectorId`))) | ||
| LEFT JOIN `pydb`.`BLSample` ON ((`pydb`.`BLSample`.`blSampleId` = `pydb`.`DataCollectionGroup`.`blSampleId`))) | ||
| LEFT JOIN `pydb`.`DiffractionPlan` ON ((`pydb`.`DiffractionPlan`.`diffractionPlanId` = `pydb`.`BLSample`.`diffractionPlanId`))) | ||
| LEFT JOIN `pydb`.`Container` ON ((`pydb`.`Container`.`containerId` = `pydb`.`BLSample`.`containerId`))) | ||
| LEFT JOIN `pydb`.`Dewar` ON ((`pydb`.`Container`.`dewarId` = `pydb`.`Dewar`.`dewarId`))) | ||
| LEFT JOIN `pydb`.`Shipping` ON ((`pydb`.`Shipping`.`shippingId` = `pydb`.`Dewar`.`shippingId`))) | ||
| LEFT JOIN `pydb`.`Crystal` ON ((`pydb`.`Crystal`.`crystalId` = `pydb`.`BLSample`.`crystalId`))) | ||
| LEFT JOIN `pydb`.`Protein` ON ((`pydb`.`Protein`.`proteinId` = `pydb`.`Crystal`.`proteinId`))) | ||
| LEFT JOIN `pydb`.`Workflow` ON ((`pydb`.`DataCollectionGroup`.`workflowId` = `pydb`.`Workflow`.`workflowId`))) | ||
| LEFT JOIN `pydb`.`v_datacollection_summary_autoprocintegration` ON ((`v_datacollection_summary_autoprocintegration`.`AutoProcIntegration_dataCollectionId` = `pydb`.`DataCollection`.`dataCollectionId`))) | ||
| LEFT JOIN `pydb`.`v_datacollection_summary_screening` ON ((`v_datacollection_summary_screening`.`Screening_dataCollectionGroupId` = `pydb`.`DataCollectionGroup`.`dataCollectionGroupId`))); | ||
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| update `pydb`.SchemaStatus set schemaStatus = 'DONE' where scriptName = '2017_11_24_DataCollectionSummary_view.sql'; |