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Merge pull request #11 from ipta/update_singularity
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Update singularity
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JPGlaser authored Feb 22, 2024
2 parents 54fcd4b + 6ea844c commit 9d28a8b
Showing 1 changed file with 10 additions and 4 deletions.
14 changes: 10 additions & 4 deletions containers/Singularity
Original file line number Diff line number Diff line change
Expand Up @@ -52,6 +52,7 @@ From: ubuntu:22.04
apt-get -y --no-install-recommends install build-essential wget cmake make libfftw3* zlib1g-dev libblas3 libblas-dev liblapack3 liblapack-dev git # gcc-7 g++-7 g++-8 gcc-8
apt-get -y --no-install-recommends install gfortran dpkg-dev libc6-dev libc-dev sed tmux emacs-nox vim nano libgsl27 libgslcblas0 libgsl-dev
apt-get -y --no-install-recommends install libssl-dev libsqlite3-dev tk-dev libgdbm-dev libc6-dev libbz2-dev liblzma-dev libffi-dev libjpeg-dev libncurses5-dev libnss3-dev libreadline-dev wget pgplot5
apt-get -y --no-install-recommends install openmpi-bin libopenmpi-dev
apt-get -y --no-install-recommends install pdftk latex2html wkhtmltopdf
apt-get -y --no-install-recommends install python3.10 python3-pip
python3.10 -m pip install pip
Expand Down Expand Up @@ -91,7 +92,7 @@ From: ubuntu:22.04
python3.10 -m pip install git+https://github.com/golamshaifullah/acor.git@master
python3.10 -m pip install git+https://github.com/jellis18/PTMCMCSampler@master
python3.10 -m pip install -U setuptools setuptools_scm==3.2.0 pep517
python3.10 -m pip install -U emcee
python3.10 -m pip install -U emcee chainconsumer
python3.10 -m pip install -U pdflatex

#tempo2
Expand All @@ -109,13 +110,18 @@ From: ubuntu:22.04
cp -r T2runtime/* ${TEMPO2}
rm -rf /tmp/tempo2
cd /

python3.10 -m pip install git+https://github.com/PolyChord/PolyChordLite@master

python3.10 -m pip install git+https://github.com/nanograv/PINT@master
python3.10 -m pip install git+https://github.com/vallis/libstempo@master
python3.10 -m pip install git+https://github.com/nanograv/enterprise@master
python3.10 -m pip install git+https://github.com/nanograv/enterprise_extensions@master
# python3.10 -m pip install git+https://github.com/nanograv/enterprise@master
python3.10 -m pip install git+https://github.com/nanograv/enterprise@dev
python3.10 -m pip install git+https://github.com/nanograv/enterprise_extensions@dcbusyweek
python3.10 -m pip install git+https://github.com/nanograv/pint_pal@main

python3.10 -m pip install git+https://github.com/nanograv/enterprise@dev
python3.10 -m pip install git+https://github.com/nanograv/enterprise_extensions@dcbusyweek

apt-get clean
apt-get -y autoremove

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