build #128
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| name: build | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: "46 20 * * 1" # Run at a random time weekly | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.10"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Setup conda and dependencies | |
| run: | | |
| util/setup_ci.sh ${{ matrix.python-version }} | |
| - name: Test | |
| run: | | |
| eval "$(conda shell.bash hook)" | |
| conda activate python${{ matrix.python-version }} | |
| # Need to build epitopelib for current version of Python | |
| (cd nblib/epitopelib && CFLAGS="-I$(python -c 'import numpy; print(numpy.get_include())')" cythonize -f -i epitopelib.pyx) | |
| cd test | |
| # Run a quick subset of all tests | |
| python test.py Tests.test_integrative_model |