Code

🗃️ Decorators feature branch#1252

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Merged

averissimo merged 94 commits intomaininsightsengineering/teal.modules.clinical:mainfrom 1187_decorate_output@maininsightsengineering/teal.modules.clinical:1187_decorate_output@mainCopy head branch name to clipboardDec 17, 2024

+2,612-682

Commits

Commits on Nov 25, 2024

• feat: add decorator wrapper

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Commits on Nov 26, 2024

• Merge branch 'main' into 1187_decorate_output@main

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• add decorators @param to standard template arguments

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• move decorators parameter to module templeate parameters

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• bring check_decorators from tmg

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• rename decorators to transformators in ui_decorate_teal_data

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• Merge branch '1187_decorate_output@main' of https://github.com/insightsengineering/teal.modules.clinical into 1187_decorate_output@main

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Commits on Nov 27, 2024

• introduce decorators for tm_g_pp_vitals

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• revert changes for vitals

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• fix: update wrapper to use 'inner' in srv_decorate_teal_data

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• Merge branch 'main' into 1187_decorate_output@main

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• [skip roxygen] [skip vbump] Roxygen Man Pages Auto Update

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• add normalize_decorators

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• fix normalize_decorators

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Commits on Nov 28, 2024

• update utils from tmg

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• introduce decorators for tm_g_ci (#1265)

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• Introduce decorators to tm_g_forest_rsp (#1266)

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• introduce decorators for tm_g_forest_tte (#1264)

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• introduce decorators for tm_a_gee (#1262)

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• introduce decorators for tm_g_ipp (#1263)

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Commits on Nov 29, 2024

• introduce decorators to tm_g_pp_patient_timeline (#1270)

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• [skip roxygen] [skip vbump] Roxygen Man Pages Auto Update

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• introduce decorators for tm_g_pp_therapy (#1268)

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• chore: necessary for pre-commit

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• chore: remove print plot expression

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• Revert "chore: remove print plot expression"

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• feat: add template for decorators parameter

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• chore: use decorators template instead of shared parameter

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• chore: change order of null.ok

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• introduce decorators for tm_g_pp_vitals (#1261)

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• introduce decorators for tm_t_abnormality (#1257)

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• Introduce decorators for tm_g_km (#1254)

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• Introduce decorators for tm_g_lineplot (#1255)

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• introduce decorators for tm_t_ancova (#1256)

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• introduce decorators for tm_t_abnormality_by_worst_grade (#1260)

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• [skip roxygen] [skip vbump] Roxygen Man Pages Auto Update

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Commits on Dec 2, 2024

• Merged origin/main into 1187_decorate_output@main

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Commits on Dec 3, 2024

• fix: remove teal-only function

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Commits on Dec 4, 2024

• Include decorators for tm_t_events_summary (#1278)

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• Introduce decorators for tm_t_coxreg (#1274)

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• Introduce decorator for tm_t_events_patyear (#1277)

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• Introduce decorator for tm_t_events (#1275)

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• Introduce decorators for tm_t_binary_outcome (#1273)

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• [skip roxygen] [skip vbump] Roxygen Man Pages Auto Update

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• introduce decorators for tm_g_barchart_simple (#1267)

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• chore: fix R CMD check with missing arguments and using rlang that is not in dependencies

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Commits on Dec 5, 2024

• Add decorators to tm t mult events (#1281)

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• Introduce decorators for tm_t_tte (#1280)

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• docs: documentation simplification

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• Merge branch 'main' into 1187_decorate_output@main

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• docs: minor typo gg -> ggplot2

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Commits on Dec 9, 2024

• introduce decorators for tm_g_pp_adverse_events (#1269)

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• [skip roxygen] [skip vbump] Roxygen Man Pages Auto Update

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• Adds decorators to tm_t_pp_medical_history (#1289)

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Commits on Dec 10, 2024

• Adds decorators to tm_t_logistic (#1290)

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• Adds decorators to tm_t_summary (#1293)

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• Adds decorators to tm_t_smq (#1292)

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• Adds decorators to tm_t_shift_by_grade (#1285)

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• [skip roxygen] [skip vbump] Roxygen Man Pages Auto Update

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• Adds decorators to tm_t_summary_by (#1294)

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• Adds decorators to tm_t_shift_by_arm (#1287)

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• Adds decorators to tm_t_shift_by_arm_by_worst (#1286)

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• feat: pass qenv.error to module when template code fails

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• Merge branch 'main' into 1187_decorate_output@main

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Commits on Dec 11, 2024

• Introduce decorators for tm_t_exposure (#1279)

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• [skip roxygen] [skip vbump] Roxygen Man Pages Auto Update

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• Adds decorators to tm_t_pp_laboratory (#1291)

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• Adds decorators to tm_t_pp_basic_info (#1282)

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• Adds decorators to tm_t_pp_prior_medication (#1288)

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• Introduce decorators for tm_t events by grade (#1276)

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• [skip roxygen] [skip vbump] Roxygen Man Pages Auto Update

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• docs: remove roxygen inline call

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• Merge branch 'main' into 1187_decorate_output@main

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• fix: linter error

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Commits on Dec 12, 2024

• Adds decorators to tm_a_mmrm (#1300)

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• fix: tm_t_coxreg bug

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Commits on Dec 13, 2024

• fix: adverse events error

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Commits on Dec 16, 2024

• Uses same code for source code generation in modules (#1301)

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Commits on Dec 17, 2024

• fix: remove rlang usage

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• Decorators: Accepts new snapshot from testthat::test() (#1304)

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• fix: adds stats prefix

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• Merge branch 'main' into 1187_decorate_output@main

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