Skip to content

Commit

Permalink
Merge branch 'main' into 1231_man_links@main
Browse files Browse the repository at this point in the history
  • Loading branch information
@m7pr
m7pr authored Dec 11, 2024
2 parents 20967ba + 2fe0194 commit 111292f
Show file tree
Hide file tree
Showing 6 changed files with 196 additions and 5 deletions.
76 changes: 76 additions & 0 deletions .github/workflows/check.yaml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -41,6 +41,25 @@ jobs:
checking top-level files .* NOTE
unit-test-report-brand: >-
https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/thumbs/teal.png
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
r-cmd-non-cran:
name: R CMD Check (non-CRAN) 🧬
uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
Expand All @@ -61,6 +80,25 @@ jobs:
checking Rd .usage sections .* NOTE
checking for unstated dependencies in vignettes .* NOTE
checking top-level files .* NOTE
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
coverage:
name: Coverage 📔
uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
Expand All @@ -69,6 +107,25 @@ jobs:
with:
additional-env-vars: |
NOT_CRAN=true
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
linter:
if: github.event_name != 'push'
name: SuperLinter 🦸‍♀️
Expand All @@ -80,6 +137,25 @@ jobs:
REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
with:
auto-update: true
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
gitleaks:
name: gitleaks 💧
uses: insightsengineering/r.pkg.template/.github/workflows/gitleaks.yaml@main
Expand Down
19 changes: 19 additions & 0 deletions .github/workflows/docs.yaml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -42,3 +42,22 @@ jobs:
with:
default-landing-page: latest-tag
additional-unit-test-report-directories: unit-test-report-non-cran
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
77 changes: 77 additions & 0 deletions .github/workflows/release.yaml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -16,12 +16,51 @@ jobs:
REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
with:
default-landing-page: latest-tag
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
validation:
name: R Package Validation report 📃
needs: release
uses: insightsengineering/r.pkg.template/.github/workflows/validation.yaml@main
secrets:
REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
with:
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
release:
name: Create release 🎉
uses: insightsengineering/r.pkg.template/.github/workflows/release.yaml@main
Expand All @@ -46,6 +85,25 @@ jobs:
checking top-level files .* NOTE
unit-test-report-brand: >-
https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/thumbs/teal.png
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
coverage:
name: Coverage 📔
needs: [release, docs]
Expand All @@ -55,6 +113,25 @@ jobs:
with:
additional-env-vars: |
NOT_CRAN=true
deps-installation-method: setup-r-dependencies
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
insightsengineering/nestcolor
insightsengineering/roxy.shinylive
wasm:
name: Build WASM packages 🧑‍🏭
needs: release
Expand Down
23 changes: 21 additions & 2 deletions .github/workflows/scheduled.yaml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ name: Scheduled 🕰️

on:
schedule:
- cron: '45 3 * * 0'
- cron: "45 3 * * 0"
workflow_dispatch:
inputs:
chosen-workflow:
Expand Down Expand Up @@ -56,6 +56,23 @@ jobs:
)
name: revdepcheck ↩️
uses: insightsengineering/r.pkg.template/.github/workflows/revdepcheck.yaml@main
with:
lookup-refs: |
insightsengineering/teal
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
rhub:
if: >
github.event_name == 'schedule' || (
Expand All @@ -70,12 +87,14 @@ jobs:
insightsengineering/teal.transform
insightsengineering/tern
insightsengineering/rlistings
insightsengineering/formatters
insightsengineering/rtables
insightsengineering/rtables.officer
insightsengineering/teal.code
insightsengineering/teal.data
insightsengineering/teal.logger
insightsengineering/teal.reporter
insightsengineering/teal.slice
insightsengineering/teal.widgets
insightsengineering/teal.slice
insightsengineering/tern.gee
insightsengineering/tern.mmrm
4 changes: 2 additions & 2 deletions DESCRIPTION
View file
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
Package: teal.modules.clinical
Title: 'teal' Modules for Standard Clinical Outputs
Version: 0.9.1.9038
Date: 2024-12-10
Version: 0.9.1.9039
Date: 2024-12-11
Authors@R: c(
person("Joe", "Zhu", , "[email protected]", role = c("aut", "cre")),
person("Jana", "Stoilova", , "[email protected]", role = "aut"),
Expand Down
2 changes: 1 addition & 1 deletion NEWS.md
View file
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# teal.modules.clinical 0.9.1.9038
# teal.modules.clinical 0.9.1.9039

### Enhancements
* Added `teal.logger` functionality for logging changes in shiny inputs in all modules.
Expand Down

0 comments on commit 111292f

Please sign in to comment.