[skip CI] update annotation.md #563
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| name: ERMrestJS tests | |
| on: [push] | |
| jobs: | |
| install-and-test: | |
| runs-on: ubuntu-20.04 | |
| env: | |
| PYTHONWARNINGS: ignore:Unverified HTTPS request | |
| timeout-minutes: 15 | |
| steps: | |
| - name: Checkout repository code | |
| uses: actions/checkout@v4 | |
| with: | |
| path: ermrestjs | |
| - name: Setup the system | |
| run: | | |
| whoami | |
| echo "npm version:" | |
| npm --version | |
| echo "node version:" | |
| node --version | |
| sudo timedatectl set-timezone America/Los_Angeles | |
| export PATH="$(systemd-path user-binaries):$PATH" | |
| sudo apt-get -y update | |
| sudo apt-get -y install libcurl4-openssl-dev libjson-c-dev | |
| sudo service postgresql stop || true | |
| sudo service postgresql start 12 | |
| sudo apt-get install apache2 apache2-dev ssl-cert libapache2-mod-wsgi-py3 | |
| sudo ln -s /etc/apache2/conf-enabled /etc/apache2/conf.d | |
| sudo a2enmod ssl | |
| sudo a2ensite default-ssl | |
| sudo groupadd -o -g $(id -g www-data) apache | |
| sudo apt-get install -y python3-setuptools python3-ply | |
| sudo python3 --version | |
| sudo pip3 --version | |
| sudo su -c 'echo /usr/lib/python3.8/site-packages > /usr/local/lib/python3.8/dist-packages/sys-site-packages.pth' | |
| sudo su -c 'python3 -c "import site;print(site.PREFIXES);"' | |
| sudo su -c 'python3 -c "import site;print(site.getsitepackages())"' | |
| : # the line below will make sure pyopenssl and cryptography have compatible versions | |
| sudo pip3 install -U pyopenssl cryptography | |
| sudo pip3 install flask | |
| sudo pip3 install requests | |
| sudo pip3 install globus_sdk | |
| sudo pip3 install psycopg2-binary | |
| sudo pip3 install oauth2client | |
| - name: Install webauthn | |
| run: | | |
| sudo useradd -m -r webauthn | |
| sudo su -c '/usr/bin/python3 -c "import sys;import pprint;pprint.pprint(sys.path)"' - webauthn | |
| git clone https://github.com/informatics-isi-edu/webauthn.git | |
| cd webauthn | |
| sudo make testvars | |
| sudo make install | |
| sudo make deploy | |
| sudo bash ./test/ubuntu-travis-setup.sh | |
| sudo a2enmod webauthn | |
| sudo service apache2 restart | |
| - name: Install hatrac | |
| run: | | |
| git clone https://github.com/informatics-isi-edu/hatrac.git | |
| cd hatrac | |
| sudo python3 ./setup.py install | |
| sudo useradd -m -r hatrac | |
| sudo -H -u postgres createuser -d hatrac | |
| sudo -H -u postgres psql -c "GRANT webauthn TO hatrac" | |
| sudo -H -u hatrac createdb hatrac | |
| sudo cp test/hatrac_config.json ~hatrac/ | |
| sudo -H -u hatrac hatrac-deploy admin | |
| sudo su -c 'python3 -c "import hatrac as m;m.sample_httpd_config()"' - hatrac > ../wsgi_hatrac.conf | |
| sudo cp ../wsgi_hatrac.conf /etc/apache2/conf.d/wsgi_hatrac.conf | |
| sudo mkdir /var/www/hatrac | |
| sudo chown hatrac /var/www/hatrac | |
| - name: Install ermrest | |
| run: | | |
| git clone https://github.com/informatics-isi-edu/ermrest.git | |
| cd ermrest | |
| sudo -H make install PLATFORM=ubuntu1604 | |
| sudo which ermrest-deploy | |
| sudo -H make deploy PLATFORM=ubuntu1604 | |
| cd ../ermrestjs | |
| sudo cp test/ermrest_config.json /home/ermrest/ | |
| sudo chmod a+r /home/ermrest/ermrest_config.json | |
| - name: Install ermrestjs | |
| run: | | |
| cd ermrestjs | |
| sudo make root-install | |
| - name: Add tests users | |
| run: | | |
| sudo -H -u webauthn webauthn2-manage adduser test1 | |
| sudo -H -u webauthn webauthn2-manage passwd test1 dummypassword | |
| sudo -H -u webauthn webauthn2-manage addattr admin | |
| sudo -H -u webauthn webauthn2-manage assign test1 admin | |
| sudo -H -u webauthn webauthn2-manage adduser test2 | |
| sudo -H -u webauthn webauthn2-manage passwd test2 dummypassword | |
| - name: Restart apache | |
| run: | | |
| sudo service apache2 restart | |
| - name: Run test cases | |
| id: unit-test | |
| run: | | |
| cd ermrestjs | |
| make test | |
| - name: Diagnosis after failure | |
| if: ${{ failure() }} | |
| run: | | |
| echo "/etc/apache2 folder:" | |
| sudo ls -lR /etc/apache2 | |
| echo "/var/run/apache2 folder:" | |
| sudo ls -lR /var/run/apache2 | |
| echo "webauthn config" | |
| sudo cat /etc/apache2/conf.d/webauthn.conf | |
| echo "webauthn wsgi config" | |
| sudo cat /etc/apache2/conf.d/wsgi_webauthn2.conf | |
| echo "ermrest wsgi config" | |
| sudo cat /etc/apache2/conf.d/wsgi_ermrest.conf | |
| echo "apache error log:" | |
| sudo cat /var/log/apache2/error.log | |
| echo "apache access log:" | |
| sudo cat /var/log/apache2/access.log | |
| echo "sessions:" | |
| sudo -H -u webauthn psql -c 'select * from webauthn2_db.session' webauthn |