properly check duplicates between columns and related entities #501
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: ERMrestJS tests | |
| on: [push] | |
| jobs: | |
| install-and-test: | |
| runs-on: ubuntu-20.04 | |
| env: | |
| PYTHONWARNINGS: ignore:Unverified HTTPS request | |
| timeout-minutes: 15 | |
| steps: | |
| - name: Checkout repository code | |
| uses: actions/checkout@v4 | |
| with: | |
| path: ermrestjs | |
| - name: Setup the system | |
| run: | | |
| whoami | |
| echo "npm version:" | |
| npm --version | |
| echo "node version:" | |
| node --version | |
| sudo timedatectl set-timezone America/Los_Angeles | |
| export PATH="$(systemd-path user-binaries):$PATH" | |
| sudo apt-get -y update | |
| sudo apt-get -y install libcurl4-openssl-dev libjson-c-dev | |
| sudo service postgresql stop || true | |
| sudo service postgresql start 12 | |
| sudo apt-get install apache2 apache2-dev ssl-cert libapache2-mod-wsgi-py3 | |
| sudo ln -s /etc/apache2/conf-enabled /etc/apache2/conf.d | |
| sudo a2enmod ssl | |
| sudo a2ensite default-ssl | |
| sudo groupadd -o -g $(id -g www-data) apache | |
| sudo apt-get install -y python3-setuptools python3-ply | |
| sudo python3 --version | |
| sudo pip3 --version | |
| sudo su -c 'echo /usr/lib/python3.8/site-packages > /usr/local/lib/python3.8/dist-packages/sys-site-packages.pth' | |
| sudo su -c 'python3 -c "import site;print(site.PREFIXES);"' | |
| sudo su -c 'python3 -c "import site;print(site.getsitepackages())"' | |
| : # the line below will make sure pyopenssl and cryptography have compatible versions | |
| sudo pip3 install -U pyopenssl cryptography | |
| sudo pip3 install flask | |
| sudo pip3 install requests | |
| sudo pip3 install globus_sdk | |
| sudo pip3 install psycopg2-binary | |
| sudo pip3 install oauth2client | |
| - name: Install webauthn | |
| run: | | |
| sudo useradd -m -r webauthn | |
| sudo su -c '/usr/bin/python3 -c "import sys;import pprint;pprint.pprint(sys.path)"' - webauthn | |
| git clone https://github.com/informatics-isi-edu/webauthn.git | |
| cd webauthn | |
| sudo make testvars | |
| sudo make install | |
| sudo make deploy | |
| sudo bash ./test/ubuntu-travis-setup.sh | |
| sudo a2enmod webauthn | |
| sudo service apache2 restart | |
| - name: Install hatrac | |
| run: | | |
| git clone https://github.com/informatics-isi-edu/hatrac.git | |
| cd hatrac | |
| sudo python3 ./setup.py install | |
| sudo useradd -m -r hatrac | |
| sudo -H -u postgres createuser -d hatrac | |
| sudo -H -u postgres psql -c "GRANT webauthn TO hatrac" | |
| sudo -H -u hatrac createdb hatrac | |
| sudo cp test/hatrac_config.json ~hatrac/ | |
| sudo -H -u hatrac hatrac-deploy admin | |
| sudo su -c 'python3 -c "import hatrac as m;m.sample_httpd_config()"' - hatrac > ../wsgi_hatrac.conf | |
| sudo cp ../wsgi_hatrac.conf /etc/apache2/conf.d/wsgi_hatrac.conf | |
| sudo mkdir /var/www/hatrac | |
| sudo chown hatrac /var/www/hatrac | |
| - name: Install ermrest | |
| run: | | |
| git clone https://github.com/informatics-isi-edu/ermrest.git | |
| cd ermrest | |
| sudo -H make install PLATFORM=ubuntu1604 | |
| sudo which ermrest-deploy | |
| sudo -H make deploy PLATFORM=ubuntu1604 | |
| cd ../ermrestjs | |
| sudo cp test/ermrest_config.json /home/ermrest/ | |
| sudo chmod a+r /home/ermrest/ermrest_config.json | |
| - name: Install ermrestjs | |
| run: | | |
| cd ermrestjs | |
| sudo make root-install | |
| - name: Add tests users | |
| run: | | |
| sudo -H -u webauthn webauthn2-manage adduser test1 | |
| sudo -H -u webauthn webauthn2-manage passwd test1 dummypassword | |
| sudo -H -u webauthn webauthn2-manage addattr admin | |
| sudo -H -u webauthn webauthn2-manage assign test1 admin | |
| sudo -H -u webauthn webauthn2-manage adduser test2 | |
| sudo -H -u webauthn webauthn2-manage passwd test2 dummypassword | |
| - name: Restart apache | |
| run: | | |
| sudo service apache2 restart | |
| - name: Run test cases | |
| id: unit-test | |
| run: | | |
| cd ermrestjs | |
| make test | |
| - name: Diagnosis after failure | |
| if: ${{ failure() }} | |
| run: | | |
| echo "/etc/apache2 folder:" | |
| sudo ls -lR /etc/apache2 | |
| echo "/var/run/apache2 folder:" | |
| sudo ls -lR /var/run/apache2 | |
| echo "webauthn config" | |
| sudo cat /etc/apache2/conf.d/webauthn.conf | |
| echo "webauthn wsgi config" | |
| sudo cat /etc/apache2/conf.d/wsgi_webauthn2.conf | |
| echo "ermrest wsgi config" | |
| sudo cat /etc/apache2/conf.d/wsgi_ermrest.conf | |
| echo "apache error log:" | |
| sudo cat /var/log/apache2/error.log | |
| echo "apache access log:" | |
| sudo cat /var/log/apache2/access.log | |
| echo "sessions:" | |
| sudo -H -u webauthn psql -c 'select * from webauthn2_db.session' webauthn |