Adding gatk bundle path to diagnostic profile

ikmb · Nov 2, 2023 · f56819b · f56819b
1 parent 8b853c3
commit f56819b
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/conf/diagnostic.config b/conf/diagnostic.config
@@ -1,3 +1,4 @@
+gatk_bundle_path = "/work_ifs/ikmb_repository/references/gatk/v2/"
 
 params {
 	vep_cache_dir = "/work_ifs/ikmb_repository/databases/EnsEMBL/vep/cache"

diff --git a/nextflow.config b/nextflow.config
@@ -5,7 +5,7 @@ params {
     help = false
 
     vep_options = "--hgvs --af_gnomadg --per_gene --sift p --polyphen p --check_existing --canonical"
-
+    
     run_name = false
 
     assembly = "GRCh38"