An error occurred while executing the ribodetector_cpu command.

[kinako0130]

Hi, I encountered the following error.
Is there a solution for this?
I have tried using RiboDetector versions 0.3.1 and 0.3.0 installed via Conda.
Additionally, I tested it with Python versions 3.8.0 and 3.8.20.

Thank you in advance for your help.

Input command

ribodetector_cpu -t 20 -l 100 -i /datafilepath/SRR22266027_1_qc20.fastq -e norrna --chunk_size 256 -o /datafilepath/SRR22266027_rRNA.fastq --log /datafilepath/27_1.log

The output

2024-12-10 21:22:46 : INFO  Using high RECALL model
2024-12-10 21:22:46 : INFO  Log file: None
2024-12-10 21:22:46 : INFO  Classify reads with chunk size �[1m256�[0m
2024-12-10 21:22:46 : INFO  Writing output non-rRNA sequences into file: �[94m/datafilepath/SRR22266027_rRNA.fastq�[0m
Traceback (most recent call last):
  File "/opt/anaconda3/envs/ribodetector/bin/ribodetector_cpu", line 10, in <module>
    sys.exit(main())
  File "/opt/anaconda3/envs/ribodetector/lib/python3.8/site-packages/ribodetector/detect_cpu.py", line 822, in main
    seq_pred.detect()
  File "/opt/anaconda3/envs/ribodetector/lib/python3.8/site-packages/ribodetector/detect_cpu.py", line 599, in detect
    self.run_with_chunks()
  File "/opt/anaconda3/envs/ribodetector/lib/python3.8/site-packages/ribodetector/detect_cpu.py", line 500, in run_with_chunks
    for chunk in SeqEncoder.get_seq_chunks(*self.input,
  File "/opt/anaconda3/envs/ribodetector/lib/python3.8/site-packages/ribodetector/data_loader/seq_encoder.py", line 83, in get_seq_chunks
    seqs_chunk = list(islice(seq_iterator, chunk_size))
  File "/opt/anaconda3/envs/ribodetector/lib/python3.8/site-packages/ribodetector/data_loader/fastx_parser.py", line 21, in seq_parser
    if line[0] == '@' and record_line == 0:
IndexError: string index out of range

[dawnmy]

Could you show the first 8 lines in your /datafilepath/SRR22266027_rRNA.fastq file? It seems the fastq format was not correctly recognized by fastq parser.