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BIFO

Alice McHardy's lab @ HZI

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  1. RiboDetector RiboDetector Public

    Accurate and rapid RiboRNA sequences Detector based on deep learning

    Python 101 16

  2. traitar traitar Public

    Forked from aweimann/traitar

    From genomes to phenotypes: Traitar, the microbial trait analyzer

    Python 57 16

  3. Haploflow Haploflow Public

    C++ 29 3

  4. epitope-prediction epitope-prediction Public

    Python 16 11

  5. Quasimodo Quasimodo Public

    QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture

    C++ 13 3

  6. Phylogeography_Paper Phylogeography_Paper Public

    This repository contains all data and code for the manuscript "Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic".

    R 6 1

Repositories

Showing 10 of 85 repositories
  • phylogeny-of-single-cells Public

    snakemake workflow for the phylogenetic reconstruction of single cell lineages from multiple displacement amplified single cell DNAseq

    hzi-bifo/phylogeny-of-single-cells’s past year of commit activity
    Python 0 MIT 1 0 1 Updated Dec 21, 2024
  • Corona_Variant_Scoring Public

    Method to score circulating SARS-CoV-2 lineages on their potential antigenicity

    hzi-bifo/Corona_Variant_Scoring’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 15, 2024
  • ChemLM Public
    hzi-bifo/ChemLM’s past year of commit activity
    Jupyter Notebook 1 AFL-3.0 0 0 0 Updated Dec 12, 2024
  • mag Public Forked from nf-core/mag

    Best practice pipeline for assembly and binning of metagenomes based on CAMI2 challenge, adapted from nf-core/mag

    hzi-bifo/mag’s past year of commit activity
    Nextflow 1 MIT 114 2 0 Updated Dec 11, 2024
  • Broker4Microbiota Public

    Django App for collection and storage of sequencing orders for the sequencing facility

    hzi-bifo/Broker4Microbiota’s past year of commit activity
    JavaScript 0 0 2 0 Updated Dec 10, 2024
  • AMR_benchmarking Public
    hzi-bifo/AMR_benchmarking’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Nov 29, 2024
  • corona_lineage_dynamics Public

    SDPlots scripts for the coverage server

    hzi-bifo/corona_lineage_dynamics’s past year of commit activity
    C++ 1 0 2 0 Updated Nov 24, 2024
  • seminar-dlmb-2024-winter-public Public
    hzi-bifo/seminar-dlmb-2024-winter-public’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Oct 14, 2024
  • AMR_prediction_pipeline Public
    hzi-bifo/AMR_prediction_pipeline’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 10, 2024
  • epitope-prediction Public
    hzi-bifo/epitope-prediction’s past year of commit activity
    Python 16 GPL-3.0 11 0 2 Updated Jun 10, 2024
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