ci: use ubuntu-24 for updated htslib

1.13 doesn't correctly recognize bed indexes <samtools/htslib#1350>
huishenlab · Oct 18, 2024 · bccf78c · bccf78c
1 parent e467973
commit bccf78c
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -22,7 +22,7 @@ jobs:
         config:
           - {os: macos-latest,   r: 'release', htslib: 'htslib',     install_cmd: 'brew install'}
           # - {os: windows-latest, r: 'release'}
-          - {os: ubuntu-latest,  r: 'release', htslib: 'libhts-dev', install_cmd: 'sudo apt-get update && sudo apt-get install -y'}
+          - {os: ubuntu-24.04,  r: 'release', htslib: 'libhts-dev', install_cmd: 'sudo apt-get update && sudo apt-get install -y'}
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
@@ -14,7 +14,7 @@ env:
 
 jobs:
   pkgdown:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-24.04
     # Only restrict concurrency for non-PR jobs
     concurrency:
       group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}

diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
@@ -12,7 +12,7 @@ permissions: read-all
 
 jobs:
   test-coverage:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-24.04
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}