try macos + ubuntu

huishenlab · Jul 2, 2024 · 76052c1 · 76052c1
1 parent 119efa1
commit 76052c1
Showing 1 changed file with 15 additions and 4 deletions.
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -2,7 +2,7 @@
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches: [main, master]
+    branches: [main, master, ci]
     paths-ignore:
       - '**/README.md'
   pull_request:
@@ -20,9 +20,9 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: macos-latest,   r: 'release'}
-          - {os: windows-latest, r: 'release'}
-          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,  r: 'release', htslib: 'libhts-dev', install_cmd: 'sudo apt-get update && sudo apt-get install -y'}
+          - {os: macos-latest,   r: 'release', htslib: 'htslib',     install_cmd: 'brew install'}
+          # - {os: windows-latest, r: 'release'}
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
@@ -44,6 +44,17 @@ jobs:
           extra-packages: any::rcmdcheck
           needs: check
 
+      - name: Install brew
+        if: matrix.config.os == 'macos-latest'
+        uses: Homebrew/actions/setup-homebrew@master
+
+      - name: Install deps
+        run: |
+          ${{ matrix.config.install_cmd }} ${{ matrix.config.htslib }}
+          echo "-------------------HTSLIB-----------------------"
+          pkg-config --cflags --libs htslib
+          echo "------------------------------------------------"
+
       - uses: r-lib/actions/check-r-package@v2
         with:
           upload-snapshots: true