logging: add logging support for query_all #28
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master, dev] | |
| paths-ignore: | |
| - '**/README.md' | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macos-latest, r: 'release', htslib: 'htslib', install_cmd: 'brew install'} | |
| # - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'release', htslib: 'libhts-dev', install_cmd: 'sudo apt-get update && sudo apt-get install -y'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - name: Install deps | |
| run: | | |
| ${{ matrix.config.install_cmd }} ${{ matrix.config.htslib }} | |
| echo "-------------------HTSLIB-----------------------" | |
| pkg-config --cflags --libs htslib | |
| echo "------------------------------------------------" | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true |