Adding zarr chunk funcs for skeleton downloading #39
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: Test build | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libboost-all-dev | |
| wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh; | |
| bash miniconda.sh -b -p $HOME/miniconda | |
| export PATH="$HOME/miniconda/bin:$PATH" | |
| hash -r | |
| conda config --set always_yes yes --set changeps1 no | |
| conda update -q conda | |
| conda info -a | |
| conda create -q -n raygun python=${{ matrix.python-version }} tensorflow pytorch torchvision torchaudio cudatoolkit=11.3 affogato -c pytorch -c nvidia -c conda-forge --yes | |
| source activate raygun | |
| python -m pip install --upgrade pip setuptools wheel Cython | |
| pip install git+https://github.com/htem/raygun | |
| # - name: Lint with flake8 | |
| # run: | | |
| # pip install flake8 | |
| # # stop the build if there are Python syntax errors or undefined names | |
| # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| # continue-on-error: true | |
| # - name: Test with pytest | |
| # run: | | |
| # pip install pytest | |
| # pytest |