Logging to fix tests

hms-dbmi · Oct 8, 2024 · 724764e · 724764e
1 parent 2eca8bf
commit 724764e
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Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/.github/workflows/github-actions-test.yml b/.github/workflows/github-actions-test.yml
@@ -16,4 +16,4 @@ jobs:
       - name: Test with Maven
         run: mvn clean test
         env:
-          GITHUB_TOKEN: ${{ github.token }}
+          GITHUB_TOKEN: ${{ github.token }}
diff --git a/...ssing/src/main/java/edu/harvard/hms/dbmi/avillach/hpds/processing/PhenotypeMetaStore.java b/...ssing/src/main/java/edu/harvard/hms/dbmi/avillach/hpds/processing/PhenotypeMetaStore.java
@@ -45,12 +45,14 @@ public PhenotypeMetaStore(@Value("${HPDS_DATA_DIRECTORY:/opt/local/hpds/}") Stri
         columnMetaFile = hpdsDataDirectory + "columnMeta.javabin";
         try (ObjectInputStream objectInputStream = new ObjectInputStream(new GZIPInputStream(new FileInputStream(columnMetaFile)));){
             TreeMap<String, ColumnMeta> _metastore = (TreeMap<String, ColumnMeta>) objectInputStream.readObject();
+            log.info("_metastore.size() = " + _metastore.size());
             TreeMap<String, ColumnMeta> metastoreScrubbed = new TreeMap<String, ColumnMeta>();
             for(Map.Entry<String,ColumnMeta> entry : _metastore.entrySet()) {
                 metastoreScrubbed.put(entry.getKey().replaceAll("\\ufffd",""), entry.getValue());
             }
             metaStore = metastoreScrubbed;
             patientIds = (TreeSet<Integer>) objectInputStream.readObject();
+            log.info("patientIds.size() = " + patientIds.size());
             objectInputStream.close();
         } catch (IOException | ClassNotFoundException e) {
             log.warn("************************************************");