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@DFKoetsier DFKoetsier released this 29 Jun 08:25
· 116 commits to master since this release
v1.1
1e09bff

Changes:

  • Add shell script peach for running PEACH.
  • Remove VCF filtering step.
    • Remove VCFTools dependency.
    • Remove filtered vcf output file.
  • Add experimental support for input VCF's for reference genomes with version v38.
  • Change format of arguments to PEACH.
    • Arguments are no longer positional.
    • Remove arguments vcftools, recreate_bed and transcript_tsv, since they are no longer needed.
    • Add optional parameter for experimental v38 VCF support.
  • Change format of panel JSON.
    • Change key "url_prescription_info" to "urlPrescriptionInfo" for consistency with other keys.
    • Add "annotationV37" key for reference sequence differences, for support of v38 reference genomes.
  • Adjust format of genotype TSV output file.
    • Split "haplotype" column into "haplotype" and "zygosity".
  • Add script for running tests.
Assets 3
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