Public notebooks

Some notebook covering various topics. Some of them are and will still be in construction for a while.

Topics

Analysis

• Whats is the image moment ? (or how to fit an ellipse)
• Classify particle motion from MSD anaysis and bayesian inference
• Analyze particle motion with MSD
• Fit a 2D Gaussian

Bibliography

• Find connections between authors within your field of research papers using Mendeley
• Find articles with PubPeer comments into Mendeley

Code

• Compute MSD in Python quickly with FFT
• Import TrackMate XML files in Python

Visualization

• Interactive 3D brownian motion with Vispy

Theory

• Explore microfluidic flow rate and pressure according to a defined geometry.

Authors

Hadrien Mary

License

MIT. See LICENSE