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@gustaveroussy

Gustave Roussy

Gustave Roussy

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  1. sopa sopa Public

    Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

    Python 143 16

  2. EaCoN EaCoN Public

    Easy Copy Number !

    R 21 14

  3. FG-Lab FG-Lab Public

    R 8 5

  4. CFS CFS Public

    R package using ICA based method for spatial transcriptomics analysis (Visium/Slide-seq/CosMX/MERSCOPE)

    R 7 2

  5. MetaPRISM_Public MetaPRISM_Public Public

    Code support all the analyses and figures for the MetaPRISM paper.

    Python 6 1

  6. single-cell single-cell Public

    R 5 4

Repositories

Showing 10 of 52 repositories
  • sopa Public

    Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

    gustaveroussy/sopa’s past year of commit activity
    Python 143 BSD-3-Clause 16 29 (1 issue needs help) 1 Updated Nov 25, 2024
  • training_bigr Public

    This repository containing all trainings from bioinformatics platform of Gustave Roussy

    gustaveroussy/training_bigr’s past year of commit activity
    HTML 0 0 0 0 Updated Oct 27, 2024
  • CFS Public

    R package using ICA based method for spatial transcriptomics analysis (Visium/Slide-seq/CosMX/MERSCOPE)

    gustaveroussy/CFS’s past year of commit activity
    R 7 2 3 0 Updated Oct 23, 2024
  • FG-Lab Public
    gustaveroussy/FG-Lab’s past year of commit activity
    R 8 5 3 0 Updated Sep 9, 2024
  • prismtoolbox Public

    Toolbox for histopathology image analysis

    gustaveroussy/prismtoolbox’s past year of commit activity
    Python 4 BSD-3-Clause 0 0 0 Updated Aug 22, 2024
  • apt.cytoscan.2.11.7 Public

    apt-copynumber-cyto-ssa v2.11.7

    gustaveroussy/apt.cytoscan.2.11.7’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jul 8, 2024
  • apt.cytoscan.2.4.0 Public

    Affymetrix CytoScan (750k / HD) processing using apt-copynumber-cyto-ssa (2.4.0)

    gustaveroussy/apt.cytoscan.2.4.0’s past year of commit activity
    R 1 0 0 0 Updated Jul 8, 2024
  • bigr_rna_editing Public

    This pipeline uses SPRINT and RNAEditingIndexer to identify editing event from RNA-seq

    gustaveroussy/bigr_rna_editing’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 21, 2024
  • single-cell Public
    gustaveroussy/single-cell’s past year of commit activity
    R 5 GPL-3.0 4 0 1 Updated Jun 7, 2024
  • DAISY_Public Public

    Public repository supporting the paper of the DAISY study.

    gustaveroussy/DAISY_Public’s past year of commit activity
    Python 0 2 0 0 Updated Apr 8, 2024
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