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WIP React-less HiGlass-less Gosling#1086

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sehilyi wants to merge 169 commits intogosling-lang:maingosling-lang/gosling.js:mainfrom etowahadams:mainetowahadams/gosling.js:mainCopy head branch name to clipboard

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Commits

Commits on Jun 12, 2024

• feat: new demo page

  etowahadams

  committed
  52b12e0

• Merge pull request #1 from etowahadams/new-dev-server

  Show description for f1255fc
  etowahadams

  authored
  f1255fc

• feat: upgrade pixi

  etowahadams

  committed
  cafc659

• feat: pixi-manager

  etowahadams

  committed
  3acfc54

• feat: alias

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  committed
  c0dd708

• feat: add to demo

  etowahadams

  committed
  9f00ad8

• Merge pull request #2 from etowahadams/pixi-manager

  Show description for 2b7f4f5
  etowahadams

  authored
  2b7f4f5

• Merge branch 'gosling-lang:main' into main

  etowahadams

  authored
  a3fc509

• refactor: add react import

  etowahadams

  committed
  1107a7e

• feat: remove higlass dependencies, add vendored dependencies

  etowahadams

  committed
  6e48246

• feat: vendored higlass imports

  etowahadams

  committed
  c070488

• Merge pull request #3 from etowahadams/higlass-imports

  Show description for ff118a9
  etowahadams

  authored
  ff118a9

• Merge branch 'gosling-lang:main' into main

  etowahadams

  authored
  887a5f2

• feat: higlass alias, fix pixi manager

  etowahadams

  committed
  3c1d8d2

• feat: dummy track

  etowahadams

  committed
  a0e8fb6

• feat: dummy track example

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  committed
  186ebd1

• feat: higlass types

  etowahadams

  committed
  a6c1a74

• Merge pull request #4 from etowahadams/dummy-track

  Show description for 1470400
  etowahadams

  authored
  1470400

• feat: export PixiTrack

  etowahadams

  committed
  f257186

• feat: text track

  etowahadams

  committed
  e43796e

• feat: text track alias

  etowahadams

  committed
  12a1363

• feat: text track

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  committed
  099c357

• feat: higlass utils

  etowahadams

  committed
  e7a4980

• feat: text track example

  etowahadams

  committed
  06edb1f

• Merge pull request #5 from etowahadams/text-track

  Show description for 604d78f
  etowahadams

  authored
  604d78f

• feat: add signals

  etowahadams

  committed
  b435c83

• feat: circular brush

  etowahadams

  committed
  52f6648

• fix: alias name

  etowahadams

  committed
  91398aa

• feat: circular brush example

  etowahadams

  committed
  8a39ab2

• Merge pull request #6 from etowahadams/circular-brush

  Show description for bca07c4
  etowahadams

  authored
  bca07c4

• Merge branch 'gosling-lang:main' into main

  etowahadams

  authored
  b043339

• Merge branch 'gosling-lang:main' into main

  etowahadams

  authored
  6d6ab8c

• feat: tile proxy

  etowahadams

  committed
  29bc2aa

• feat: basic gosling track

  etowahadams

  committed
  f120886

• feat: make GoslingTrackClass standalone

  etowahadams

  committed
  deaa172

• feat: remove HGC from mark drawing

  etowahadams

  committed
  901686a

• feat: export TiledPixiTrack

  etowahadams

  committed
  3835cb0

Commits on Jun 13, 2024

• feat: add interactors

  etowahadams

  committed
  952828a

• feat: export hg datafetcher

  etowahadams

  committed
  0f7f84b

• fix: linear brush model

  etowahadams

  committed
  63ac37a

• feat: GoslingTrack plot

  etowahadams

  committed
  41c5bfd

• feat: gosling track example

  etowahadams

  committed
  32285f7

• Merge pull request #7 from etowahadams/gosling-track

  Show description for 2ee784e
  etowahadams

  authored
  2ee784e

• feat: axis track

  etowahadams

  committed
  e16d445

• feat: axis track example

  etowahadams

  committed
  e41130a

• feat: brush linear

  etowahadams

  committed
  1778bae

• fix: add missing type package

  etowahadams

  committed
  1048754

• refactor: remove types

  etowahadams

  committed
  c56d5b0

• feat: add example

  etowahadams

  committed
  d15977a

• Merge pull request #8 from etowahadams/linear-brush

  Show description for c70fa6a
  etowahadams

  authored
  c70fa6a

• feat: rename to brush-circular

  etowahadams

  committed
  9bd22f4

• feat: rename genomic axis

  etowahadams

  committed
  c5b95dd

• feat: bigwig datafetcher

  etowahadams

  committed
  829142b

• fix: update datafetchers

  etowahadams

  committed
  ce31563

• feat: compile

  etowahadams

  committed
  2c2fc8e

Commits on Jun 14, 2024

• feat: add basic layout

  Show description for 5ba3607
  

  etowahadams

  and

  sehilyi

  committed
  5ba3607

Commits on Jun 17, 2024

• feat: new examples

  etowahadams

  committed
  e030b4a

• feat: new render function

  etowahadams

  committed
  19cfcb9

• refactor: split into files

  etowahadams

  committed
  67928cb

Commits on Jun 18, 2024

• feat: beddb data

  etowahadams

  committed
  124a9e4

• feat: don't show labels on overlay tracks

  etowahadams

  committed
  88a8b9f

• refactor: rendering

  etowahadams

  committed
  7b68785

• feat: corces example

  etowahadams

  committed
  90455f2

• feat: brush linear

  etowahadams

  committed
  a2ff1fe

• feat: simple linked views

  etowahadams

  committed
  4298cd3

Commits on Jun 19, 2024

• feat: linked brush

  etowahadams

  committed
  58b095f

Commits on Jun 20, 2024

• feat: refactored linking

  etowahadams

  committed
  d0e4591

• fix: linkedEncoding

  etowahadams

  committed
  9fa84fe

• refactor: clean up circular brush

  etowahadams

  committed
  ba16d2a

Commits on Jun 21, 2024

• feat: dual circular brush plot

  etowahadams

  committed
  11775fd

• feat: linked circle

  etowahadams

  committed
  b68abc8

• fix: brushing

  etowahadams

  committed
  65f0a31

• Merge pull request #9 from etowahadams/spec-to-pos

  Show description for cb71018
  etowahadams

  authored
  cb71018

• feat: identify broken track

  etowahadams

  committed
  8d66d03

Commits on Jun 24, 2024

• fix: give correct bounding box for circular

  etowahadams

  committed
  01ed2f6

• fix: cancer spec

  etowahadams

  committed
  7e7bb52

• Merge pull request #10 from etowahadams/fix-cancer-vis

  Show description for 65cfba6
  etowahadams

  authored
  65cfba6

• feat: mocked worker

  etowahadams

  committed
  a6e54d4

• make vitest run on demo

  etowahadams

  committed
  e50c0e0

• test: linkedEncoding

  etowahadams

  committed
  41f5488

• Merge pull request #11 from etowahadams/fix-tests

  Show description for 80ba261
  etowahadams

  authored
  80ba261

• feat: heatmap plot

  etowahadams

  committed
  ae2e062

• feat: alias for heatmap

  etowahadams

  committed
  20720e3

• feat: heatmap example

  etowahadams

  committed
  cd34ca8

• refactor: heatmap plot inputs

  etowahadams

  committed
  db1fd6b

• refactor heatmap internals

  etowahadams

  committed
  b662ed0

• feat: introduce signals

  etowahadams

  committed
  e4dafe3

• copy over zoomPan interactor

  etowahadams

  committed
  8bde195

Commits on Jun 25, 2024

• feat: zoomPanXY interactor

  etowahadams

  committed
  95e2891

• feat: full working zoomXY

  etowahadams

  committed
  4f35c1a

• refactor: rename to panZoomHeatmap

  etowahadams

  committed
  8fa24b0

• feat: heatmap options

  etowahadams

  committed
  08824a8

• Merge pull request #12 from etowahadams/heatmap

  Show description for 28aa1ba
  etowahadams

  authored
  28aa1ba

• feat: refactor connectivity

  etowahadams

  committed
  0f4f79c

• Merge pull request #13 from etowahadams/refactor-linking

  Show description for 997dc35
  etowahadams

  authored
  997dc35

• feat: working heatmap

  etowahadams

  committed
  ccac22c

• feat: working heatmap

  etowahadams

  committed
  12c29e5

Commits on Jun 26, 2024

• feat: add basic heatmap axis

  etowahadams

  committed
  9e1bc6c

• feat: basic reverse orientation

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  committed
  00a0c2f

• feat: reverse example

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  committed
  2c0fb9f

• feat: panZoom for axis track

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  committed
  7353692

• feat: vertical Gosling track

  etowahadams

  committed
  9ac8874

• feat: make brushes use new interactor

  etowahadams

  committed
  358002f

• feat: working example

  etowahadams

  committed
  ff2cccb

• feat: basic fix to heatmap scaling

  etowahadams

  committed
  8618c1c

Commits on Jun 27, 2024

• feat: working heatmap x and y

  etowahadams

  committed
  2f79d6d

• feat: refine heatmap axis

  etowahadams

  committed
  6e11667

• feat: static brushes

  etowahadams

  committed
  ca64862

• Merge pull request #14 from etowahadams/heatmap-rendering

  Show description for 3d5ee57
  etowahadams

  authored
  3d5ee57

Commits on Jun 28, 2024

• fix: unused imports

  etowahadams

  committed
  6847ced

• refine matrix linking

  etowahadams

  committed
  390e5f7

• feat: basic gosling component

  etowahadams

  committed
  d75df4d

• feat: basic editor

  etowahadams

  committed
  608a0dc

• fix: x domain

  etowahadams

  committed
  16ee5b7

• feat: fix linking bugs

  etowahadams

  committed
  426f8cc

• remove old test

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  committed
  79a885f

• Merge pull request #15 from etowahadams/basic-gos-component

  Show description for 398b120
  etowahadams

  authored
  398b120

Commits on Jul 1, 2024

• fix: csv datafetcher options

  etowahadams

  committed
  7ffb851

Commits on Jul 2, 2024

• feat: add csv example

  etowahadams

  committed
  314f4be

• fix: give spec

  etowahadams

  committed
  9c7f6b8

• Merge pull request #16 from etowahadams/fix-give

  Show description for 5d4e2f2
  etowahadams

  authored
  5d4e2f2

• fix: json data fetcher

  etowahadams

  committed
  50f11bb

• Merge pull request #17 from etowahadams/fix-json-data

  Show description for f49a917
  etowahadams

  authored
  f49a917

• fix: single overlay

  etowahadams

  committed
  0d13bfa

• fix: no show heatmap label

  etowahadams

  committed
  bb86b7d

• fix: move effect to tracks

  etowahadams

  committed
  5875e2b

• only put interactor if not overlaid on previous

  etowahadams

  committed
  f7f9747

• fix: bounding box calculation

  etowahadams

  committed
  6bdc6f9

Commits on Jul 3, 2024

• feat: add basic y domain

  etowahadams

  committed
  2874b20

• feat: add test

  etowahadams

  committed
  25f17b2

• fix panZoom yDomain

  etowahadams

  committed
  d39eaf6

• feat: yDomain for gosling plot

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  committed
  7d9828a

• update matrix example

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  committed
  dd14c20

• fix: multiple same linkingId

  etowahadams

  committed
  0a98c43

• update matrix

  etowahadams

  committed
  e6a8166

• Merge pull request #18 from etowahadams/matrix-annotations

  Show description for f6f6d41
  etowahadams

  authored
  f6f6d41

• reorganize files

  etowahadams

  committed
  cd62c05

Commits on Jul 6, 2024

• feat: basic resizing

  etowahadams

  committed
  65a2ab8

• refactor no more callback

  etowahadams

  committed
  db148fe

• resize pixi canvas after rendering

  etowahadams

  committed
  328988a

• feat: rescale height

  etowahadams

  committed
  fc8117f

• fixes for responsive height

  etowahadams

  committed
  c6bd779

• Merge pull request #19 from etowahadams/responsive-width

  Show description for c56f704
  etowahadams

  authored
  c56f704

• pixi manager property comment

  etowahadams

  committed
  d591b16

• feat: basic pixi manager persistance

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  committed
  664bd44

• remove console warns

  etowahadams

  committed
  cde2d99

• Merge pull request #20 from etowahadams/better-component

  Show description for 4ae90d5
  etowahadams

  authored
  4ae90d5

• fix: brushes and types

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  committed
  7b07dc8

• comment about types

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  committed
  789f7cf

• add documentation

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  committed
  246ddda

• Merge pull request #21 from etowahadams/color-brushes

  Show description for 6b7c2fa
  etowahadams

  authored
  6b7c2fa

• feat: use color

  etowahadams

  committed
  280b8d1

• Merge pull request #22 from etowahadams/fix-heatmap-color

  Show description for 31995fb
  etowahadams

  authored
  31995fb

• feat: dummy track

  etowahadams

  committed
  03e79f1

• Merge pull request #23 from etowahadams/add-dummy-track

  Show description for 4cb915a
  etowahadams

  authored
  4cb915a

• make csv data fetcher take assembly

  etowahadams

  committed
  36b3c86

• Merge pull request #24 from etowahadams/fix-csv

  Show description for dc372b8
  etowahadams

  authored
  dc372b8

• feat: gff data fetcher

  etowahadams

  committed
  943b5be

• feat: bam

  etowahadams

  committed
  7f217a5

• feat: bed data fetcher

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  committed
  f217432

• feat: vcf data fetcher

  etowahadams

  committed
  fd2b1ee

• Merge pull request #25 from etowahadams/other-data-types

  Show description for 75eb0b5
  etowahadams

  authored
  75eb0b5

Commits on Jul 7, 2024

• feat: basic tooltip

  etowahadams

  committed
  c2d0548

• feat: working tooltip on static

  etowahadams

  committed
  beebbbf

• no zoom pan with alt key

  etowahadams

  committed
  6be04c1

• clear brush when click

  etowahadams

  committed
  0e34e75

Commits on Jul 8, 2024

• clarify linked encoding

  etowahadams

  committed
  69ff028

• Merge pull request #26 from etowahadams/tooltip

  Show description for 05f0417
  etowahadams

  authored
  05f0417

• add explanation

  etowahadams

  committed
  6b62a32