Update 2_generate_frag_sdf.py #199
hyunp2
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1 error and 2 warnings
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The process '/usr/share/miniconda/condabin/mamba' failed with exit code 1
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build
Mamba support is still experimental and can result in differently solved environments!
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# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<
Traceback (most recent call last):
File "/usr/share/miniconda/lib/python3.11/site-packages/conda/exception_handler.py", line 16, in __call__
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.11/site-packages/conda_env/cli/main.py", line 49, in do_call
exit_code = getattr(module, func_name)(args, parser)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.11/site-packages/conda/notices/core.py", line 123, in wrapper
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.11/site-packages/conda_env/cli/main_update.py", line 139, in execute
result[installer_type] = installer.install(prefix, specs, args, env)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.11/site-packages/mamba/mamba_env.py", line 54, in mamba_install
index = load_channels(pool, channel_urls, repos, prepend=False)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.11/site-packages/mamba/utils.py", line 126, in load_channels
index = get_index(
^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.11/site-packages/mamba/utils.py", line 107, in get_index
is_downloaded = dlist.download(api.MAMBA_DOWNLOAD_FAILFAST)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
RuntimeError: Download error (28) Timeout was reached [https://repo.anaconda.com/pkgs/main/noarch/repodata.json.zst]
Failed to connect to repo.anaconda.com port 443 after 9000 ms: Timeout was reached
`$ /usr/share/miniconda/condabin/mamba update --name test --file envs/environment-cpu.yml`
environment variables:
CIO_TEST=<not set>
CONDA=/usr/share/miniconda
CONDA_AUTO_UPDATE_CONDA=false
CONDA_PKGS_DIR=/home/runner/conda_pkgs_dir
CONDA_ROOT=/usr/share/miniconda
CURL_CA_BUNDLE=<not set>
DEPLOYMENT_BASEPATH=/opt/runner
GITHUB_EVENT_PATH=/home/runner/work/_temp/_github_workflow/event.json
GITHUB_PATH=/home/runner/work/_temp/_runner_file_commands/add_path_19e71cbc-8d62-
4850-8250-59c387c2a851
LD_PRELOAD=<not set>
PATH=/usr/share/miniconda/condabin:/home/runner/.local/bin:/opt/pipx_bin:/h
ome/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/lo
cal/.ghcup/bin:/home/runner/.dotnet/tools:/snap/bin:/usr/local/sbin:/u
sr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
:/snap/bin
REQUESTS_CA_BUNDLE=<not set>
SELENIUM_JAR_PATH=/usr/share/java/selenium-server.jar
SSL_CERT_FILE=<not set>
SWIFT_PATH=/usr/share/swift/usr/bin
active environment : None
user config file : /home/runner/.condarc
populated config files : /home/runner/.condarc
conda version : 23.5.2
conda-build version : not installed
python version : 3.11.4.final.0
virtual packages : __archspec=1=x86_64
__glibc=2.35=0
__linux=6.2.0=0
__unix=0=0
base environment : /usr/share/miniconda (writable)
conda av data dir : /usr/share/miniconda/etc/conda
conda av metadata url : None
channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
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