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Update config files for PR #2318
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run/CESM/HEMCO_Config.rc
- Trim trailing whitespace

run/CESM/geoschem_config.yml
run/GEOS/geoschem_config.yml
run/WRF/fullchem/geoschem_config.yml
- Add ACR, ALK4P, ALK7, APAN, APINP, APINN, AROMPN, BPINO, BPINN,
  BPINP, BPINOOH, BPINON, BUTN, C96O2H, C96N, C4H6, EBZ, LIMAL,
  LIMKB, LIMKET, LIMN, LIMNB, LIMO2H, MEKPN, MYRCO, PHAN, PIN,
  PINAL, PINONIC, PINO3H, PINPAN, R7N2, R7P, RCOOH, RNO3, STYR, TMB
  as advected species

run/GCClassic/geoschem_config.yml.templates/geoschem_config.yml
- Restore ALK4P as an advected species

run/GCHP/HEMCO_Diagn.rc.templates/HEMCO_Diagn.rc.fullchem
- Add Emis*Total and Emis*Bioburn entries for ACR, C4H6, HCOOH, STYR
- Add InvGFED* entries for ACR, C4H6, HCOOH, MVK, STYR

run/GCClassic/geoschem_config.yml.templates/geoschem_config.yml.fullchem
run/GCHP/geoschem_config.yml.templates/geoschem_config.yml.fullchem
- Restore ALK4P as an advected species

run/GCHP/HISTORY.rc.templates/HISTORY.rc
- Add Emis*BioBurn entries for ACR, C4H6, HCOOH, STYR,
- Add Inv*BioBurn entries for ACR, C4H6, HCOOH, STYR

run/GEOS/HEMCO_Config.rc
- Add new GFED species

run/WRF/fullchem/HEMCO_Config.rc
- Change Verbose from "0" to "false"
- Add "VerboseOnCores: root"
- Add new biomass burning species (from FURA onwards)
- Add CEDS entries for EBZ and TMB species
- Change emitted species "MACR" to "ACR" in EPA16 entries
- Update CEDS scale factors as they are in GCClassic/GCHP
- Remove .and. in ((( and ))) brackets and list them individually
- Change "$GCAPVERTRESL" to "$GCAPVERTRES" as in GCClassic/GCHP
- Add GT_Chlorine entries
- Update GFED data dir to v2023-03
- Write HEMCO_Restart file in the ./Restarts folder
- Now use Vohra timezones
- Use v2023-10 folder for NOAA_GMD_CH4
- Add scale factors as for GCClassic and GCHP

run/shared/setupConfigFiles.sh
- Now insert ASOA* and ASOG* entries after species AROMPN
  (formerly after AROMP5)

Signed-off-by: Bob Yantosca <[email protected]>
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yantosca committed Aug 15, 2024
1 parent b3108fa commit 6b409d9
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10 changes: 5 additions & 5 deletions run/CESM/HEMCO_Config.rc
Original file line number Diff line number Diff line change
Expand Up @@ -2608,20 +2608,20 @@ ch
# Reference:
# Zhang, B., & Liu, P., et al (2022). Global Emissions of Hydrogen Chloride
# and Particulate Chloride from Continental Sources. Environmental Science &
# Technology, 56(7), 3894-3904. https://doi.org/10.1021/acs.est.1c05634
# Technology, 56(7), 3894-3904. https://doi.org/10.1021/acs.est.1c05634
#
# Notes:
# - The HCl emission from open biomass burning (HCL_BIO, HCL_AGR) used the same
# activity data for GFED4 (1998-2014) and BB4CMIP (1960-2014). If your
# emission inventory for open biomass burning has already include HCl
# emissions, shut down either of them to avoid the duplicated emission sources
# - Emissions of particulate Cl are added as HCl as ISORROPIA will reparition
# Cl between particle phase and gas phase.
# Cl between particle phase and gas phase.
#==============================================================================
(((GT_Chlorine
0 HCL_ENE $ROOT/GT_Chlorine/v2024-05/GT_Chlorine_01_01_$YYYY_V1.0.0.nc HCl_ene 1960-2014/1-12/1/0 C xy kg/m2/s HCl 26 1/2 1
0 HCL_IND $ROOT/GT_Chlorine/v2024-05/GT_Chlorine_01_01_$YYYY_V1.0.0.nc HCl_ind 1960-2014/1-12/1/0 C xy kg/m2/s HCl 26 1/2 1
0 HCL_RES $ROOT/GT_Chlorine/v2024-05/GT_Chlorine_01_01_$YYYY_V1.0.0.nc HCl_res 1960-2014/1-12/1/0 C xy kg/m2/s HCl 26 1/2 1
0 HCL_ENE $ROOT/GT_Chlorine/v2024-05/GT_Chlorine_01_01_$YYYY_V1.0.0.nc HCl_ene 1960-2014/1-12/1/0 C xy kg/m2/s HCl 26 1/2 1
0 HCL_IND $ROOT/GT_Chlorine/v2024-05/GT_Chlorine_01_01_$YYYY_V1.0.0.nc HCl_ind 1960-2014/1-12/1/0 C xy kg/m2/s HCl 26 1/2 1
0 HCL_RES $ROOT/GT_Chlorine/v2024-05/GT_Chlorine_01_01_$YYYY_V1.0.0.nc HCl_res 1960-2014/1-12/1/0 C xy kg/m2/s HCl 26 1/2 1
0 HCL_WST $ROOT/GT_Chlorine/v2024-05/GT_Chlorine_01_01_$YYYY_V1.0.0.nc HCl_wstop 1960-2014/1-12/1/0 C xy kg/m2/s HCl 26 1/2 1
0 HCL_BIO $ROOT/GT_Chlorine/v2024-05/GT_Chlorine_01_01_$YYYY_V1.0.0.nc HCl_bbop 1960-2014/1-12/1/0 C xy kg/m2/s HCl 75 1/2 1
0 HCL_AGR $ROOT/GT_Chlorine/v2024-05/GT_Chlorine_01_01_$YYYY_V1.0.0.nc HCl_agri 1960-2014/1-12/1/0 C xy kg/m2/s HCl 75 1/2 1
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39 changes: 39 additions & 0 deletions run/CESM/geoschem_config.yml
Original file line number Diff line number Diff line change
Expand Up @@ -92,12 +92,19 @@ operations:
transported_species:
- ACET
- ACTA
- ACR
- AERI
- ALD2
- ALK4
- ALK4P
- ALK7
- AONITA
- APAN
- APINP
- APINN
- AROMP4
- AROMP5
- AROMPN
- ASOA1
- ASOA2
- ASOA3
Expand All @@ -111,6 +118,11 @@ operations:
- BCPO
- BENZ
- BENZP
- BPINO
- BPINN
- BPINP
- BPINOOH
- BPINON
- Br
- Br2
- BrCl
Expand All @@ -120,12 +132,16 @@ operations:
- BrSALA
- BrSALC
- BUTDI
- BUTN
- BZCO3H
- BZPAN
- C96O2H
- C96N
- C2H2
- C2H4
- C2H6
- C3H8
- C4H6
- CCl4
- CFC11
- CFC113
Expand Down Expand Up @@ -160,6 +176,7 @@ operations:
- DST2
- DST3
- DST4
- EBZ
- EOH
- ETHLN
- ETHN
Expand Down Expand Up @@ -235,7 +252,15 @@ operations:
- ISOP
- ITCN
- ITHN
- LIMAL
- LIMKB
- LIMKET
- LIMN
- LIMNB
- LIMO
- LIMO2H
- LIMO3H
- LIMPAN
- LVOC
- LVOCOA
- MACR
Expand All @@ -248,6 +273,7 @@ operations:
- MCRHP
- MCT
- MEK
- MEKPN
- MENO3
- MGLY
- MOH
Expand All @@ -267,6 +293,7 @@ operations:
- MVKHP
- MVKN
- MVKPC
- MYRCO
- N2O
- N2O5
- NH3
Expand All @@ -286,7 +313,13 @@ operations:
- OIO
- PAN
- pFe
- PHAN
- PHEN
- PIN
- PINAL
- PINONIC
- PINO3H
- PINPAN
- PIP
- PP
- PPN
Expand All @@ -296,13 +329,17 @@ operations:
- PYAC
- R4N2
- R4P
- R7N2
- R7P
- RA3P
- RB3P
- RCHO
- RCOOH
- RIPA
- RIPB
- RIPC
- RIPD
- RNO3
- RP
- SALA
- SALAAL
Expand All @@ -315,6 +352,8 @@ operations:
- SO4s
- SOAGX
- SOAIE
- STYR
- TMB
- TOLU
- TSOA0
- TSOA1
Expand Down
26 changes: 25 additions & 1 deletion run/GCClassic/HEMCO_Diagn.rc.templates/HEMCO_Diagn.rc.fullchem
Original file line number Diff line number Diff line change
Expand Up @@ -37,6 +37,12 @@ EmisACET_BioBurn ACET 111 -1 -1 2 kg/m2/s ACET_emission_flux_from_
EmisACET_Biogenic ACET 0 4 -1 2 kg/m2/s ACET_emission_flux_from_biogenic_sources
EmisACET_Ocean ACET 101 -1 -1 2 kg/m2/s ACET_emission_flux_from_ocean

###############################################################################
##### ACR emissions #####
###############################################################################
EmisACR_Total ACR -1 -1 -1 3 kg/m2/s ACR_emission_flux_from_all_sectors
EmisACR_BioBurn ACR 111 -1 -1 2 kg/m2/s ACR_emission_flux_from_biomass_burning

###############################################################################
##### ACTA emissions #####
###############################################################################
Expand Down Expand Up @@ -119,6 +125,12 @@ EmisC3H8_Anthro C3H8 0 1 -1 3 kg/m2/s C3H8_emission_flux_from_a
EmisC3H8_BioBurn C3H8 111 -1 -1 2 kg/m2/s C3H8_emission_flux_from_biomass_burning
EmisC3H8_Ship C3H8 0 10 -1 2 kg/m2/s C3H8_emission_flux_from_ships

###############################################################################
##### C4H6 emissions #####
###############################################################################
EmisC4H6_Total C4H6 -1 -1 -1 3 kg/m2/s C4H6_emission_flux_from_all_sectors
EmisC4H6_BioBurn C4H6 111 -1 -1 2 kg/m2/s C4H6_emission_flux_from_biomass_burning

###############################################################################
##### CH2Br2 emissions #####
###############################################################################
Expand Down Expand Up @@ -242,6 +254,7 @@ EmisHCl_Anthro HCl 0 1 -1 3 kg/m2/s HCl_emission_flux_from_an
###############################################################################
EmisHCOOH_Total HCOOH -1 -1 -1 3 kg/m2/s HCOOH_emission_flux_from_all_sectors
EmisHCOOH_Anthro HCOOH 0 1 -1 3 kg/m2/s HCOOH_emission_flux_from_anthropogenic
EmisHCOOH_BioBurn HCOOH 111 -1 -1 2 kg/m2/s HCOOH_emission_flux_from_biomass_burning
EmisHCOOH_Ship HCOOH 0 10 -1 2 kg/m2/s HCOOH_emission_flux_from_ship

###############################################################################
Expand Down Expand Up @@ -315,7 +328,7 @@ EmisMTPO_Total MTPO -1 -1 -1 3 kg/m2/s MTPO_emission_flux_from_a
EmisMTPO_Biogenic MTPO 0 4 -1 2 kg/m2/s MTPO_emission_flux_from_biogenic_sources

###############################################################################
##### MVK emissions #####
##### MVK emissions #####
###############################################################################
EmisMVK_Total MVK -1 -1 -1 3 kg/m2/s MVK_emission_flux_from_all_sectors
EmisMVK_BioBurn MVK 111 -1 -1 2 kg/m2/s MVK_emission_flux_from_biomass_burning
Expand Down Expand Up @@ -469,6 +482,12 @@ EmisSOAP_Ship SOAP 0 10 -1 2 kg/m2/s SOAP_emission_flux_from_s
###############################################################################
EmisSOAS_Biogenic SOAS 0 4 -1 2 kg/m2/s SOAS_emission_flux_from_biogenic_sources

##############################################################################
##### STYR emissions #####
###############################################################################
EmisSTYR_Total STYR -1 -1 -1 3 kg/m2/s STYR_emission_flux_from_all_sectors
EmisSTYR_BioBurn STYR 111 -1 -1 2 kg/m2/s STYR_emission_flux_from_biomass_burning

###############################################################################
##### TOLU emissions #####
###############################################################################
Expand Down Expand Up @@ -724,6 +743,7 @@ HcoConvectiveCloudTopHeight -1 103 -1 -1 2 level Convective_cloud_
# GFED Extension
#=============================
#InvGFED_ACET ACET 111 -1 -1 2 kg/m2/s ACET_emission_flux_from_GFED_extension
#InvGFED_ACR ACR 111 -1 -1 2 kg/m2/s ACR_emission_flux_from_GFED_extension
#InvGFED_ACTA ACTA 111 -1 -1 2 kg/m2/s ACTA_emission_flux_from_GFED_extension
#InvGFED_ALD2 ALD2 111 -1 -1 2 kg/m2/s ALD2_emission_flux_from_GFED_extension
#InvGFED_ALK4 ALK4 111 -1 -1 2 kg/m2/s ALK4_emission_flux_from_GFED_extension
Expand All @@ -732,13 +752,16 @@ HcoConvectiveCloudTopHeight -1 103 -1 -1 2 level Convective_cloud_
#InvGFED_BENZ BENZ 111 -1 -1 2 kg/m2/s BENZ_emission_flux_from_GFED_extension
#InvGFED_C2H6 C2H6 111 -1 -1 2 kg/m2/s C2H6_emission_flux_from_GFED_extension
#InvGFED_C3H8 C3H8 111 -1 -1 2 kg/m2/s C3H8_emission_flux_from_GFED_extension
#InvGFED_C4H6 C4H6 111 -1 -1 2 kg/m2/s C4H6_emission_flux_from_GFED_extension
#InvGFED_CH2O CH2O 111 -1 -1 2 kg/m2/s CH2O_emission_flux_from_GFED_extension
#InvGFED_CO CO 111 -1 -1 2 kg/m2/s CO_emission_flux_from_GFED_extension
#InvGFED_EOH EOH 111 -1 -1 2 kg/m2/s EOH_emission_flux_from_GFED_extension
#InvGFED_FURA FURA 111 -1 -1 2 kg/m2/s FURA_emission_flux_from_GFED_extension
#InvGFED_GLYX GLYX 111 -1 -1 2 kg/m2/s GLYX_emission_flux_from_GFED_extension
#InvGFED_HCOOH HCOOH 111 -1 -1 2 kg/m2/s HCOOH_emission_flux_from_GFED_extension
#InvGFED_ISOP ISOP 111 -1 -1 2 kg/m2/s ISOP_emission_flux_from_GFED_extension
#InvGFED_MEK MEK 111 -1 -1 2 kg/m2/s MEK_emission_flux_from_GFED_extension
#InvGFED_MVK MVK 111 -1 -1 2 kg/m2/s MVK_emission_flux_from_GFED_extension
#InvGFED_MGLY MGLY 111 -1 -1 2 kg/m2/s MGLY_emission_flux_from_GFED_extension
#InvGFED_MOH MOH 111 -1 -1 2 kg/m2/s MOH_emission_flux_from_GFED_extension
#InvGFED_MTPA MTP 111 -1 -1 2 kg/m2/s MTPA_emission_flux_from_GFED_extension
Expand All @@ -755,6 +778,7 @@ HcoConvectiveCloudTopHeight -1 103 -1 -1 2 level Convective_cloud_
#InvGFED_RCHO RCHO 111 -1 -1 2 kg/m2/s RCHO_emission_flux_from_GFED_extension
#InvGFED_SO2 SO2 111 -1 -1 2 kg/m2/s SO2_emission_flux_from_GFED_extension
#InvGFED_SOAP SOAP 111 -1 -1 2 kg/m2/s SOAP_emission_flux_from_GFED_extension
#InvGFED_STYR STYR 111 -1 -1 2 kg/m2/s STYR_emission_flux_from_GFED_extension
#InvGFED_TOLU TOLU 111 -1 -1 2 kg/m2/s TOLU_emission_flux_from_GFED_extension
#InvGFED_XYLE ACET 111 -1 -1 2 kg/m2/s XYLE_emission_flux_from_GFED_extension

Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -128,6 +128,7 @@ operations:
- AERI
- ALD2
- ALK4
- ALK4P
- ALK7
- AONITA
- APAN
Expand Down
26 changes: 25 additions & 1 deletion run/GCHP/HEMCO_Diagn.rc.templates/HEMCO_Diagn.rc.fullchem
Original file line number Diff line number Diff line change
Expand Up @@ -37,6 +37,12 @@ EmisACET_BioBurn ACET 111 -1 -1 2 kg/m2/s ACET_emission_flux_from_
EmisACET_Biogenic ACET 0 4 -1 2 kg/m2/s ACET_emission_flux_from_biogenic_sources
EmisACET_Ocean ACET 101 -1 -1 2 kg/m2/s ACET_emission_flux_from_ocean

###############################################################################
##### ACR emissions #####
###############################################################################
EmisACR_Total ACR -1 -1 -1 3 kg/m2/s ACR_emission_flux_from_all_sectors
EmisACR_BioBurn ACR 111 -1 -1 2 kg/m2/s ACR_emission_flux_from_biomass_burning

###############################################################################
##### ACTA emissions #####
###############################################################################
Expand Down Expand Up @@ -119,6 +125,12 @@ EmisC3H8_Anthro C3H8 0 1 -1 3 kg/m2/s C3H8_emission_flux_from_a
EmisC3H8_BioBurn C3H8 111 -1 -1 2 kg/m2/s C3H8_emission_flux_from_biomass_burning
EmisC3H8_Ship C3H8 0 10 -1 2 kg/m2/s C3H8_emission_flux_from_ships

###############################################################################
##### C4H6 emissions #####
###############################################################################
EmisC4H6_Total C4H6 -1 -1 -1 3 kg/m2/s C4H6_emission_flux_from_all_sectors
EmisC4H6_BioBurn C4H6 111 -1 -1 2 kg/m2/s C4H6_emission_flux_from_biomass_burning

###############################################################################
##### CH2Br2 emissions #####
###############################################################################
Expand Down Expand Up @@ -242,6 +254,7 @@ EmisHCl_Anthro HCl 0 1 -1 3 kg/m2/s HCl_emission_flux_from_an
###############################################################################
EmisHCOOH_Total HCOOH -1 -1 -1 3 kg/m2/s HCOOH_emission_flux_from_all_sectors
EmisHCOOH_Anthro HCOOH 0 1 -1 3 kg/m2/s HCOOH_emission_flux_from_anthropogenic
EmisHCOOH_BioBurn HCOOH 111 -1 -1 2 kg/m2/s HCOOH_emission_flux_from_biomass_burning
EmisHCOOH_Ship HCOOH 0 10 -1 2 kg/m2/s HCOOH_emission_flux_from_ship

###############################################################################
Expand Down Expand Up @@ -315,7 +328,7 @@ EmisMTPO_Total MTPO -1 -1 -1 3 kg/m2/s MTPO_emission_flux_from_a
EmisMTPO_Biogenic MTPO 0 4 -1 2 kg/m2/s MTPO_emission_flux_from_biogenic_sources

###############################################################################
##### MVK emissions #####
##### MVK emissions #####
###############################################################################
EmisMVK_Total MVK -1 -1 -1 3 kg/m2/s MVK_emission_flux_from_all_sectors
EmisMVK_BioBurn MVK 111 -1 -1 2 kg/m2/s MVK_emission_flux_from_biomass_burning
Expand Down Expand Up @@ -469,6 +482,12 @@ EmisSOAP_Ship SOAP 0 10 -1 2 kg/m2/s SOAP_emission_flux_from_s
###############################################################################
EmisSOAS_Biogenic SOAS 0 4 -1 2 kg/m2/s SOAS_emission_flux_from_biogenic_sources

##############################################################################
##### STYR emissions #####
###############################################################################
EmisSTYR_Total STYR -1 -1 -1 3 kg/m2/s STYR_emission_flux_from_all_sectors
EmisSTYR_BioBurn STYR 111 -1 -1 2 kg/m2/s STYR_emission_flux_from_biomass_burning

###############################################################################
##### TOLU emissions #####
###############################################################################
Expand Down Expand Up @@ -724,6 +743,7 @@ HcoConvectiveCloudTopHeight -1 103 -1 -1 2 level Convective_cloud_
# GFED Extension
#=============================
#InvGFED_ACET ACET 111 -1 -1 2 kg/m2/s ACET_emission_flux_from_GFED_extension
#InvGFED_ACR ACR 111 -1 -1 2 kg/m2/s ACR_emission_flux_from_GFED_extension
#InvGFED_ACTA ACTA 111 -1 -1 2 kg/m2/s ACTA_emission_flux_from_GFED_extension
#InvGFED_ALD2 ALD2 111 -1 -1 2 kg/m2/s ALD2_emission_flux_from_GFED_extension
#InvGFED_ALK4 ALK4 111 -1 -1 2 kg/m2/s ALK4_emission_flux_from_GFED_extension
Expand All @@ -732,13 +752,16 @@ HcoConvectiveCloudTopHeight -1 103 -1 -1 2 level Convective_cloud_
#InvGFED_BENZ BENZ 111 -1 -1 2 kg/m2/s BENZ_emission_flux_from_GFED_extension
#InvGFED_C2H6 C2H6 111 -1 -1 2 kg/m2/s C2H6_emission_flux_from_GFED_extension
#InvGFED_C3H8 C3H8 111 -1 -1 2 kg/m2/s C3H8_emission_flux_from_GFED_extension
#InvGFED_C4H6 C4H6 111 -1 -1 2 kg/m2/s C4H6_emission_flux_from_GFED_extension
#InvGFED_CH2O CH2O 111 -1 -1 2 kg/m2/s CH2O_emission_flux_from_GFED_extension
#InvGFED_CO CO 111 -1 -1 2 kg/m2/s CO_emission_flux_from_GFED_extension
#InvGFED_EOH EOH 111 -1 -1 2 kg/m2/s EOH_emission_flux_from_GFED_extension
#InvGFED_FURA FURA 111 -1 -1 2 kg/m2/s FURA_emission_flux_from_GFED_extension
#InvGFED_GLYX GLYX 111 -1 -1 2 kg/m2/s GLYX_emission_flux_from_GFED_extension
#InvGFED_HCOOH HCOOH 111 -1 -1 2 kg/m2/s HCOOH_emission_flux_from_GFED_extension
#InvGFED_ISOP ISOP 111 -1 -1 2 kg/m2/s ISOP_emission_flux_from_GFED_extension
#InvGFED_MEK MEK 111 -1 -1 2 kg/m2/s MEK_emission_flux_from_GFED_extension
#InvGFED_MVK MVK 111 -1 -1 2 kg/m2/s MVK_emission_flux_from_GFED_extension
#InvGFED_MGLY MGLY 111 -1 -1 2 kg/m2/s MGLY_emission_flux_from_GFED_extension
#InvGFED_MOH MOH 111 -1 -1 2 kg/m2/s MOH_emission_flux_from_GFED_extension
#InvGFED_MTPA MTP 111 -1 -1 2 kg/m2/s MTPA_emission_flux_from_GFED_extension
Expand All @@ -755,6 +778,7 @@ HcoConvectiveCloudTopHeight -1 103 -1 -1 2 level Convective_cloud_
#InvGFED_RCHO RCHO 111 -1 -1 2 kg/m2/s RCHO_emission_flux_from_GFED_extension
#InvGFED_SO2 SO2 111 -1 -1 2 kg/m2/s SO2_emission_flux_from_GFED_extension
#InvGFED_SOAP SOAP 111 -1 -1 2 kg/m2/s SOAP_emission_flux_from_GFED_extension
#InvGFED_STYR STYR 111 -1 -1 2 kg/m2/s STYR_emission_flux_from_GFED_extension
#InvGFED_TOLU TOLU 111 -1 -1 2 kg/m2/s TOLU_emission_flux_from_GFED_extension
#InvGFED_XYLE ACET 111 -1 -1 2 kg/m2/s XYLE_emission_flux_from_GFED_extension

Expand Down
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