Skip to content

Improve UMI collapsing, Add QC review status and others
Compare
Choose a tag to compare
@dufeiyu dufeiyu released this 08 Sep 01:00
· 60 commits to main since this release
v2.2
f8e6bb2
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
  1. Update dragen align command to correctly handle UMI collapse
  2. Add QC review status, change several QC metrics thresholds and report these metrics accordingly
  3. Check small demux_fastq size as sign of potential wrong index and stop the workflow
  4. Make launcher.pl to use Illumina run folder and align input files on storage1 as dragen demux/align command inputs
  5. Make launcher.pl to handle special cases of RESEQ, RESEARCH, NOTRANSFER properly
  6. Remove unneeded output files from data_transfer
Assets 2
Loading