Merge pull request #991 from genome/bedtools-2.27.1

updated bedtools to version 2.29.2
genome · Jan 27, 2021 · 87faba2 · 87faba2
2 parents 97572e3 + 87ab51c
commit 87faba2
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/definitions/tools/bedtools_intersect.cwl b/definitions/tools/bedtools_intersect.cwl
@@ -3,11 +3,11 @@
 cwlVersion: v1.0
 class: CommandLineTool
 
-baseCommand: ["/opt/ccdg/bedtools-2.27.1/bin/bedtools", "intersect"]
+baseCommand: ["/usr/local/bin/bedtools", "intersect"]
 
 requirements:
     - class: DockerRequirement
-      dockerPull: "ernfrid/bedtools:v2.27.1"
+      dockerPull: "quay.io/biocontainers/bedtools:2.29.2--hc088bd4_0"
     - class: ResourceRequirement
       ramMin: 4000