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Install prokka 1.14.6+galaxy1 on usegalaxy.org #442

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merged 2 commits into from
Nov 17, 2021
Merged

Install prokka 1.14.6+galaxy1 on usegalaxy.org #442

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7b8bcb3
Install prokka 1.14.6+galaxy1 on usegalaxy.org
davebx Nov 16, 2021
f99067f
Don't install dependencies in Main .org annotation
natefoo Nov 17, 2021
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4 changes: 3 additions & 1 deletion .ci/jenkins.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -637,7 +637,9 @@ function install_tools() {
log "Installing tools"
for tool_yaml in "${TOOL_YAMLS[@]}"; do
log "Installing tools in ${tool_yaml}"
log_exec shed-tools install -v -g "$GALAXY_URL" -a "$API_KEY" -t "$tool_yaml" || {
# FIXME: after https://github.com/galaxyproject/ephemeris/pull/181 is merged you would need to remove
# --skip_install_resolver_dependencies for install_resolver_dependencies in tools.yaml to work
log_exec shed-tools install --skip_install_resolver_dependencies -v -g "$GALAXY_URL" -a "$API_KEY" -t "$tool_yaml" || {
log_error "Tool installation failed"
show_logs
show_paths
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3 changes: 2 additions & 1 deletion usegalaxy.org/annotation.yml.lock
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@@ -1,11 +1,12 @@
install_repository_dependencies: true
install_resolver_dependencies: true
install_resolver_dependencies: false
install_tool_dependencies: false
tool_panel_section_label: Annotation
tools:
- name: prokka
owner: crs4
revisions:
- 8a22554cdde2
- bf68eb663bc3
- eaee459f3d69
- 111884f0d912
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