Revert "Revert "Update tools""

galaxyproject · Nov 8, 2023 · 1abbc0f · 1abbc0f
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diff --git a/usegalaxy.org/annotation.yml.lock b/usegalaxy.org/annotation.yml.lock
@@ -303,6 +303,7 @@ tools:
 - name: sortmerna
   owner: rnateam
   revisions:
+  - 10b84b577117
   - 1eafcc450052
   - 65c38d020fea
   - eb35257d2e29
@@ -372,18 +373,21 @@ tools:
   revisions:
   - 30f08d74024f
   - a7ce2601500c
+  - e94187d661df
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
 - name: funannotate_annotate
   owner: iuc
   revisions:
   - 582fd74dc2a1
+  - 756376aeb1ae
   - 9feee7fc49a1
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
 - name: funannotate_predict
   owner: iuc
   revisions:
+  - 1bc5a03faf2e
   - 51b6ee65ef7f
   - f31125bb85ea
   tool_panel_section_id: annotation

diff --git a/usegalaxy.org/assembly.yml.lock b/usegalaxy.org/assembly.yml.lock
@@ -168,6 +168,7 @@ tools:
   - 8d1af5db538d
   - ad80238462c1
   - d9f6a00b6db7
+  - ee17a294d3a3
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
 - name: spades
@@ -192,6 +193,7 @@ tools:
   owner: bgruening
   revisions:
   - 39bed8de8017
+  - 78c533842eeb
   - 7c847ec300b8
   - 936f0b5e7fcc
   - a199cd7ac344
@@ -203,6 +205,7 @@ tools:
   owner: bgruening
   revisions:
   - 045c7c3d8e59
+  - 0ee0c3089254
   - 366a11d316a7
   - 3f7be05a1597
   - 5bec28269d95

diff --git a/usegalaxy.org/chip_seq.yml.lock b/usegalaxy.org/chip_seq.yml.lock
@@ -27,6 +27,7 @@ tools:
   revisions:
   - 424aefbd7777
   - 640d3af5d833
+  - 86e2413cf3f8
   tool_panel_section_id: chip_seq
   tool_panel_section_label: ChIP-seq
 - name: sicer

diff --git a/usegalaxy.org/fasta_fastq.yml.lock b/usegalaxy.org/fasta_fastq.yml.lock
@@ -283,6 +283,7 @@ tools:
 - name: filtlong
   owner: iuc
   revisions:
+  - 1f296803dfa3
   - 41b2ad601cf0
   - 8880fb74ef56
   - a72af9de6bf5

diff --git a/usegalaxy.org/get_data.yml.lock b/usegalaxy.org/get_data.yml.lock
@@ -10,6 +10,7 @@ tools:
   - 4317d3cb6cba
   - 4df8de2d0e48
   - 653e89d73fc4
+  - 6591f049cf7e
   - 69ebb7f46e45
   - 6ea73833cf67
   - 7068f48d0ef9
@@ -74,6 +75,7 @@ tools:
   owner: iuc
   revisions:
   - 6cb20e130473
+  - 7d87a9d58aa1
   - f9db47f68e5e
   tool_panel_section_id: get_data
   tool_panel_section_label: Get Data
diff --git a/usegalaxy.org/graph_display_data.yml.lock b/usegalaxy.org/graph_display_data.yml.lock
@@ -11,6 +11,7 @@ tools:
   - 222c02df5d55
   - 4a229a7ad638
   - 6fabdcde0214
+  - 8334dc98c48e
   - a536d2736c2d
   - c7655b5a94af
   - c80db5d6fd8c

diff --git a/usegalaxy.org/machine_learning.yml.lock b/usegalaxy.org/machine_learning.yml.lock
@@ -7,6 +7,7 @@ tools:
   owner: bgruening
   revisions:
   - 1e088aa741eb
+  - 25b46af53232
   - 29e4122c90de
   - 60c726f5cc5e
   - 65820fb7257b
@@ -25,6 +26,7 @@ tools:
   - 2a853a2d2e72
   - 2b8d85927742
   - 2d8478144bb2
+  - 4d81e3e2fb63
   - 61a6132df9e0
   - 8a794e6d3388
   - 94d91334c787
@@ -39,6 +41,7 @@ tools:
   - 053570bac5ea
   - 1f0c955fabc7
   - 20cd4269deb2
+  - 522137aaa9c4
   - 5b35833076f0
   - 66d7efc06000
   - 772e0e89fc68
@@ -56,6 +59,7 @@ tools:
   - 3814a92c1416
   - 4a5266c96889
   - 508ce0649bec
+  - 61b2d8f8811e
   - 77c04469e8b8
   - 7f6079deac6f
   - 9d77b259ef27
@@ -86,12 +90,14 @@ tools:
   - ddc4fe317a92
   - e03a58b31c12
   - e23cfe4be9d4
+  - f6ea9fc38223
   tool_panel_section_id: machine_learning
   tool_panel_section_label: Machine Learning
 - name: sklearn_estimator_attributes
   owner: bgruening
   revisions:
   - 07843f917990
+  - 30d21a6041f6
   - 5a125d1ac9b9
   - 5ae00d2908f2
   - 867caa39eaa4
@@ -116,6 +122,7 @@ tools:
   - 887e0aaa482e
   - 9dc28a4b6ca8
   - bfc7bdfcb423
+  - e06ab1e112cc
   tool_panel_section_id: machine_learning
   tool_panel_section_label: Machine Learning
 - name: sklearn_svm_classifier
@@ -126,6 +133,7 @@ tools:
   - 14fa42b095c4
   - 6d23883e0b94
   - 73d2ef652879
+  - 80852884053f
   - b7c3e9a3b954
   - d2afc87db26b
   - f458724cc317
@@ -144,6 +152,7 @@ tools:
   - ab9977548806
   - b4ba9602a36e
   - db7eb7302fc9
+  - e99cccc3ca13
   - eb41d87cb1de
   - fed1850f01c3
   tool_panel_section_id: machine_learning
@@ -157,6 +166,7 @@ tools:
   - 25ab6b4e376e
   - 301e07345c93
   - 36e8d6d5d01b
+  - 7626ea9c2e1b
   - a36a45cb96fa
   - d37a7f17e35d
   - e5a5ad882f1f
@@ -169,6 +179,7 @@ tools:
   - 0c74d3164ac8
   - 118e230e85ce
   - 3f25f37ee3db
+  - 4c4ec859c31a
   - 7388ffedf12c
   - 7442b94d6a1e
   - 840f29aad145
@@ -187,6 +198,7 @@ tools:
   - 226524df8c6c
   - 2a1afd3481ce
   - 7366e5108e9f
+  - 7614281473da
   - b07416ec8d16
   - c84ab9ca4e5c
   - e79200975daf
@@ -202,6 +214,7 @@ tools:
   - 4db563e8d453
   - 7ae443e6217d
   - 823ecc0bce45
+  - 8b1b2b91f8d0
   - 9871a634540f
   - aa83e7e3c398
   - cd02bf168d23
@@ -219,12 +232,14 @@ tools:
   - ad7e0b4291ee
   - aeca97d9a214
   - bb9fc9d46ea4
+  - e10e776f2109
   - e13a7c05b3a4
   tool_panel_section_id: machine_learning
   tool_panel_section_label: Machine Learning
 - name: sklearn_ensemble
   owner: bgruening
   revisions:
+  - 060ca94ac049
   - 1682df52c084
   - 1a53edc4b438
   - 315f01a9d2c2
@@ -246,6 +261,7 @@ tools:
   - 5773e98921fc
   - 6d21b03e00a1
   - 74adae8d7b0f
+  - 96bb4c49e30e
   - a7c667ff83fe
   - ae0fafb53c1d
   - c2cd3219543a
@@ -260,6 +276,7 @@ tools:
   - 1bef885255e0
   - 50b3e080cef0
   - 6c030fe29722
+  - 761269451e98
   - 80074b842ebd
   - 826c3e68e7a9
   - a5c2ce4ea328
@@ -273,6 +290,7 @@ tools:
   - 0ee984c1cbd6
   - 15bcf1a7543b
   - 55703205546f
+  - 6ffedbe712c0
   - 80ca74b1cb36
   - adc6137e7c73
   - ae69f6918abe
@@ -289,6 +307,7 @@ tools:
   - 1e98dbb8d5bc
   - 5c9fb40ae174
   - 6000c1589f33
+  - 627be0156505
   - 6db5c1dfb076
   - 70c5a9127f99
   - 7d98dfb04d27
@@ -304,6 +323,7 @@ tools:
   - 237ae72d58a3
   - 2d032cff49eb
   - 4335cec181ba
+  - 6adef419e041
   - 7696d389675c
   - 87cb9cb44d1f
   - 893285b150f8
@@ -324,6 +344,7 @@ tools:
   - 927586a18553
   - c648d0716fb0
   - c9969328b42f
+  - d4808d5b83da
   - dc4b5fd604a6
   tool_panel_section_id: machine_learning
   tool_panel_section_label: Machine Learning
@@ -335,6 +356,7 @@ tools:
   - 734c66aa945a
   - 8e447b95e6a8
   - adb084b901cc
+  - f0ede473a7e8
   - fb17e19b62a4
   - fc2e64a27e90
   - fc70bf5c3b58
@@ -350,6 +372,7 @@ tools:
   - 3312fb686ffb
   - 33c564caa3c4
   - 6e25381dad5c
+  - a2e3cf2f9f40
   - b6f5443c4f58
   - ce2fd1edbc6e
   - e10ffa9e0b90
@@ -361,6 +384,7 @@ tools:
   revisions:
   - 044729657181
   - 0926c2b1315f
+  - 22e73afd5206
   - 4a1cd790e323
   - 61fb99c55558
   - bfc44324a773
@@ -379,6 +403,7 @@ tools:
   - 612ca26c197d
   - 61634a87efc7
   - a4f18bbb4eca
+  - caeb57858702
   - f93f0cdbaf18
   tool_panel_section_id: machine_learning
   tool_panel_section_label: Machine Learning
@@ -390,6 +415,7 @@ tools:
   - 222c02df5d55
   - 4a229a7ad638
   - 6fabdcde0214
+  - 8334dc98c48e
   - a536d2736c2d
   - c7655b5a94af
   - c80db5d6fd8c
@@ -403,6 +429,7 @@ tools:
   - 3045d322d4ac
   - 74f96ebc5554
   - 8e95b68b178b
+  - b7d104ede67e
   - c48ffc96fe79
   - d562708bb095
   tool_panel_section_id: machine_learning
@@ -414,6 +441,7 @@ tools:
   - 24c1cc2dd4a4
   - 3af626081467
   - 945a53c248de
+  - c17f3eacdb14
   - caf164dd0e18
   - f06ad033c114
   tool_panel_section_id: machine_learning
@@ -422,6 +450,7 @@ tools:
   owner: bgruening
   revisions:
   - 0af678661e20
+  - 2af1346e68c9
   - 470aed90aa41
   - 818f9b69d8a0
   - e1317b5502fa
@@ -438,6 +467,7 @@ tools:
   - 6d1a9fae57eb
   - 92e09b827300
   - 9f9cf31e3111
+  - b7e93c1deb3f
   - e6893a4bcb7b
   tool_panel_section_id: machine_learning
   tool_panel_section_label: Machine Learning

diff --git a/usegalaxy.org/metagenomic_analysis.yml.lock b/usegalaxy.org/metagenomic_analysis.yml.lock
@@ -18,6 +18,7 @@ tools:
   - 54f751e413f4
   - 62c9df8382c2
   - 64be1ac21109
+  - e8ac2b53f262
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: vsearch
@@ -92,6 +93,7 @@ tools:
   - 4a6ee918c13a
   - 6ef0b5664c69
   - a3b86937ead6
+  - dad9da48a09a
   - e3cbd2287f63
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
@@ -103,6 +105,7 @@ tools:
   - 54ccb7e1f49a
   - 584008e574b2
   - 72ed72122deb
+  - a4db66553a61
   - bd46669113b9
   - e177a8ea0bf1
   tool_panel_section_id: metagenomic_analysis
@@ -356,6 +359,7 @@ tools:
 - name: maxbin2
   owner: mbernt
   revisions:
+  - 2bc40bfbcfb4
   - 8a0473eb465e
   - cfd50144a871
   tool_panel_section_id: metagenomic_analysis

diff --git a/usegalaxy.org/multiple_alignments.yml.lock b/usegalaxy.org/multiple_alignments.yml.lock
@@ -16,6 +16,7 @@ tools:
   revisions:
   - 0c84cce7b030
   - 5a92f4c476b5
+  - 87c1c223c704
   tool_panel_section_id: multiple_alignments
   tool_panel_section_label: Multiple Alignments
 - name: interval2maf
@@ -30,6 +31,7 @@ tools:
 - name: mafft
   owner: rnateam
   revisions:
+  - 6f28e90db932
   - a65296ffb4a0
   - aaefa93c2dd2
   - c5908940967d
@@ -40,6 +42,7 @@ tools:
   owner: devteam
   revisions:
   - 4daabc25df00
+  - 5b097fde95dd
   - d6694932c5e0
   - d9c2b2fde6a3
   tool_panel_section_id: multiple_alignments

diff --git a/usegalaxy.org/ncbi_blast_.yml.lock b/usegalaxy.org/ncbi_blast_.yml.lock
@@ -9,6 +9,7 @@ tools:
   - 0e3cf9594bb7
   - 2889433c7ae1
   - 5edc472ec434
+  - a52d2d93e595
   - e25d3acf6e68
   tool_panel_section_id: ncbi_blast_
   tool_panel_section_label: NCBI BLAST+