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| name: tn93 | ||
| owner: iuc | ||
| description: Compute distances between sequences | ||
| long_description: | | ||
| This is a simple program meant to compute pairwise distances between aligned | ||
| nucleotide sequences in sequential FASTA format using the Tamura Nei 93 distance | ||
| remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/tools/tn93/ | ||
| homepage_url: https://github.com/veg/tn93/ | ||
| type: unrestricted | ||
| categories: | ||
| - Sequence Analysis | ||
| auto_tool_repositories: | ||
| name_template: "{{ tool_id }}" | ||
| description_template: "Wrapper for the TN-93 tool: {{ tool_name }}" | ||
| suite: | ||
| name: "suite_tn93" | ||
| description: "TN-93 – Transmission Analysis by Distance Clustering" | ||
| long_description: | | ||
| TN-93 uses the 1993 Tamura-Nei model to deduce pathogen transmission by genetic distance estimation. |
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| <?xml version="1.0"?> | ||
| <macros> | ||
| <token name="@VERSION@">1.0.4</token> | ||
| <xml name="citations"> | ||
| <citations> | ||
| <citation type="bibtex"> | ||
| @UNPUBLISHED{spond, | ||
| author = "Sergei Kosakovsky Pond", | ||
| title = "HyPhy: Hypothesis Testing using Phylogenies", | ||
| year = "2000", | ||
| note = "http://hyphy.org/", | ||
| url = "http://hyphy.org/"} | ||
| </citation> | ||
| <yield /> | ||
| </citations> | ||
| </xml> | ||
| </macros> |
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| <tool id="tn93_readreduce" name="Merge matching reads" version="@VERSION@"> | ||
| <description>into clusters with TN-93</description> | ||
| <macros> | ||
| <import>macros.xml</import> | ||
| </macros> | ||
| <requirements> | ||
| <requirement type="package" version="@VERSION@">tn93</requirement> | ||
| </requirements> | ||
| <version_command><![CDATA[tn93 --version]]></version_command> | ||
| <command detect_errors="exit_code"><![CDATA[ | ||
| readreduce | ||
| -q | ||
| -o '$output' | ||
| #if str($options.advanced) == 'advanced': | ||
| -a $options.ambigs | ||
| -l $options.overlap | ||
| #if $options.counts_in_name: | ||
| -d '$options.counts_in_name' | ||
| #end if | ||
| -s '$size' | ||
| #end if | ||
| '$input' | ||
| ]]></command> | ||
| <inputs> | ||
| <param name="input" type="data" format="fasta" label="Input in FASTA format" /> | ||
| <conditional name="options"> | ||
| <param label="Additional options" name="advanced" type="select"> | ||
| <option value="defaults">Use defaults</option> | ||
| <option value="advanced">Specify additional parameters</option> | ||
| </param> | ||
| <when value="defaults" /> | ||
| <when value="advanced"> | ||
| <param name="size" argument="-s" type="integer" min="0" value="18" label="Mimimum cluster size to report in output" /> | ||
| <param name="ambigs" argument="-a" type="select" label="Strategy for ambiguous nucleotides"> | ||
| <option value="handle">handle</option> | ||
| <option value="resolve">resolve</option> | ||
| <option value="average">average</option> | ||
| <option value="skip">skip</option> | ||
| <option value="gapmm">gapmm</option> | ||
| </param> | ||
| <param name="overlap" argument="-l" type="integer" value="100" | ||
| label="Only count pairs that overlap by at least N bases" /> | ||
| <param name="counts_in_name" argument="-d" type="text" | ||
| optional="true" label="Sequence name component immediately preceding a copy number" /> | ||
| </when> | ||
| </conditional> | ||
| </inputs> | ||
| <outputs> | ||
| <data format="fasta" name="output" /> | ||
| </outputs> | ||
| <tests> | ||
| <test> | ||
| <param name="input" value="readreduce-in1.fa" /> | ||
| <output file="readreduce-out1.fa" ftype="fasta" name="output" sort="True" /> | ||
| </test> | ||
| <test> | ||
| <param name="input" value="readreduce-in2.fa" /> | ||
| <output file="readreduce-out2.fa" ftype="fasta" name="output" sort="True" /> | ||
| </test> | ||
| </tests> | ||
| <help>< algorithm. | ||
| ]]></help> | ||
| <expand macro="citations" /> | ||
| </tool> |
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| >B_FR_83_HXB2_ACC_K03455_5 | ||
| CCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGA | ||
| TGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCAT | ||
| TAGTAGAAATTTGTACAGAGATGGAAAAGGAAGGGAAAATTTCAAAAATT | ||
| GGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGA | ||
| CAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAA | ||
| CTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTA | ||
| AAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTC | ||
| AGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTA | ||
| GTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCA | ||
| CAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAAT | ||
| CTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACA | ||
| TGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACA | ||
| AAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACC | ||
| AGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAAC | ||
| TCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGAC | ||
| AGCTGGACTGTCAATGACATACAGAAGTTAGTGGGGAAATTGAATTGGGC | ||
| AAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTA | ||
| GAGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAG | ||
| CTAGAACTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGT | ||
| GTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGC | ||
| AAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAA | ||
| ACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACA | ||
| ATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGG | ||
| GAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACATGGGAAACA | ||
| TGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGT | ||
| TAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCA | ||
| TAGTAGGAGCAGAAACCTTC | ||
| >B_US_83_RF_ACC_M17451 | ||
| CCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGA | ||
| TGGCCCAAAAGTTAAACAATGGCCATTGACAGAGGAAAAAATAAAAGCAT | ||
| TGGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCCAAAATT | ||
| GGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGA | ||
| CAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAA | ||
| CTCAAGACTTCTGGGAAGTTCAGTTAGGAATACCACATCCTGCAGGGTTA | ||
| AAAAAGAAGAAATCAGTAACAGTATTGGATGTGGGTGATGCATATTTTTC | ||
| AGTTCCCTTAGATAAAGAGTTCAGGAAGTATACTGCATTTACCATACCTA | ||
| GTATAAACAATGAAACACCACGGATTAGATATCAGTACAATGTGCTTCCA | ||
| CAAGGGTGGAAAGGATCACCAGCAATATTCCAAAGTAGTATGACAAAAAT | ||
| CTTAGAGCCTTTTAAAAAACAAAATCCAGAAATAGTTATCTATCAATACA | ||
| TGGATGATTTGTATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAATA | ||
| AAAATAGAGGAACTGAGAGAACATCTGTTAAAGTGGGGGTTTACCACACC | ||
| GGACAAGAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAAC | ||
| TCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGAC | ||
| AGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGC | ||
| AAGTCAGATTTATGCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTA | ||
| GGGGAACCAAAGCACTAACAGAAGTAGTACAACTAACAAAAGAAGCAGAG | ||
| CTAGAACTGGCAGAAAATAGGGAGATTCTAAAAGAACCAGTACATGGAGT | ||
| GTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGC | ||
| AAGGCCAATGGACATACCAAATTTATCAAGAGCCATTTAAAAACCTGAAA | ||
| ACAGGAAAGTATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACA | ||
| ATTAACAGAGGCAGTACAAAAAGTAGCCACAGAAAGCATAGTAATATGGG | ||
| GAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAGGCA | ||
| TGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGT | ||
| CAATACCCCTCCCTTAGTAAAATTGTGGTACCAGTTAGAAAAAGAACCCA | ||
| TAATAGGAGCAGAAACTTTC | ||
| >B_US_86_JRFL_ACC_U63632 | ||
| CCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGA | ||
| TGGCCCAAAAGTCAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCAT | ||
| TAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATT | ||
| GGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAGGA | ||
| CAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAAAA | ||
| CTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTA | ||
| AAAAAGAGAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTC | ||
| AGTTCCCTTAGATAAAGACTTCAGGAAATATACTGCATTTACCATACCTA | ||
| GTATAAACAATGAGACACCAGGGATTAGGTATCAGTACAATGTGCTTCCG | ||
| CAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAAT | ||
| CTTAGAGCCTTTTAGAAAACAAAATCCAGACATAATTATCTATCAATACA | ||
| TGGATGATTTGTATGTAGGATCTGACTTAGAGATAGGGCAGCATAGAGCA | ||
| AAAATAGAGGAATTGAGACAACATCTGTTGAGGTGGGGGTTTACCACACC | ||
| AGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAAC | ||
| TCCATCCTGACAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGAC | ||
| AGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGC | ||
| AAGTCAGATTTACGCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTA | ||
| GGGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAG | ||
| CTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAGCCAGTACATGGAGT | ||
| GTATTATGACCCATCAAAAGACTTAATAGCAGAACTACAGAAGCAGGGGC | ||
| AAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAATTCTGAAA | ||
| ACAGGAAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACA | ||
| ATTAACAGAGGCAGTGCAAAAAATAGCCAATGAAAGCATAGTAATATGGG | ||
| GAAAGATTCCTAAATTTAAATTACCCATACAAAAAGAAACATGGGAAACA | ||
| TGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGT | ||
| CAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCA | ||
| TAGTAGGAGCAGAAACTTTC | ||
| >B_US_90_WEAU160_ACC_U21135 | ||
| CCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGA | ||
| TGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAGAAAATAAAAGCAT | ||
| TAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATT | ||
| GGGCCTGAAAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGA | ||
| CAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAA | ||
| CTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTTCAGGGTTA | ||
| AAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTC | ||
| AGTACCCTTAGATGAAGACTTCAGGAAGTACACTGCATTTACCATACCTA | ||
| GTATAAACAATGAAACACCAGGGATTAGATATCAGTACAATGTGCTTCCA | ||
| CAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAAT | ||
| ATTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACA | ||
| TGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACA | ||
| AAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGATTTACCACACC | ||
| AGACAAAAAACATCAAAAAGACCCTCCATTCCTTTGGATGGGTTATGAAC | ||
| TCCATCCTGATAAATGGACAGTACAGCCTATAAAGCTGCCAGAAAAAGAA | ||
| AGTTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGC | ||
| AAGTCAGATTTACGCAGGGATTAAAGTAAAGCAACTATGTAAACTCCTTA | ||
| GGGGGACCAAAGCACTAACAGAAATAATACCAATAACAGAAGAAGCAGAG | ||
| CTAGAGCTGGCAGAAAACAGGGAAATTCTAAAAGAACCGGTACATGGAGT | ||
| GTATTATGACCCATCAAAAGACTTAATAGCAGAGCTACAGAAGCAGGGGC | ||
| AAGGCCAATGGACATATCAGATTTATCAAGAGCCATTTAAAAATCTGAAA | ||
| ACAGGAAAGTATGCAAGAGTGAGGGGTGCCCACACTAATGATGTAAAACA | ||
| ATTAACAGAGGCAGTGCAGAAAATAACCACAGAAAGCATAGTAATATGGG | ||
| GAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAACA | ||
| TGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGT | ||
| CAATACCCCTCCCTTAGTGAAATTATGGTATCAGTTAGAGAAAGAACCCA | ||
| TAGTAGGAGCAGAAACTTTC | ||
| >D_CD_83_ELI_ACC_K03454_7 | ||
| CCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGA | ||
| TGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCAT | ||
| TAACAGAAATTTGTACAGATATGGAAAAGGAAGGAAAAATTTCAAGAATT | ||
| GGGCCTGAAAATCCATACAATACTCCAATATTTGCCATAAAGAAAAAAGA | ||
| CAGTACCAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAA | ||
| CTCAAGATTTCTGGGAAGTTCAATTAGGAATACCGCATCCTGCAGGGCTG | ||
| AAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTC | ||
| AGTTCCCTTAGATGAAGATTTTAGGAAATATACCGCCTTTACCATATCTA | ||
| GTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCA | ||
| CAGGGATGGAAAGGATCACCGGCAATATTCCAAAGTAGCATGACAAAAAT | ||
| CTTAGAGCCCTTTAGAAAACAAAATCCAGAAATGGTTATCTATCAATACA | ||
| TGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGGACA | ||
| AAAATAGAGAAATTAAGAGAACATCTATTGAGGTGGGGATTTACCAGACC | ||
| AGATAAAAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGTTATGAAC | ||
| TCCATCCTGATAAATGGACAGTACAGTCTATAAAACTGCCAGAAAAGGAG | ||
| AGCTGGACTGTCAATGATATACAGAACTTAGTGGAGAGATTAAACTGGGC | ||
| AAGCCAGATTTATCCAGGAATTAAAGTAAGACAATTATGTAAACTCCTTA | ||
| GGGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAA | ||
| TTAGAACTGGCAGAAAACAGGGAAATTTTAAAAGAACCAGTACATGGAGT | ||
| GTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAACAAGGGC | ||
| ACGGCCAATGGACATACCAAATTTATCAAGAACCATTTAAAAATCTGAAA | ||
| ACAGGAAAGTATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAGCA | ||
| ATTAGCAGAGGCAGTGCAAAGAATATCCACAGAAAGCATAGTGATATGGG | ||
| GAAGGACTCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAACA | ||
| TGGTGGGCAGAGTATTGGCAAGCCACTTGGATTCCTGAGTGGGAATTTGT | ||
| CAATACCCCTCCTTTAGTAAAATTATGGTACCAGTTAGAGAAGGAACCCA | ||
| TAATAGGAGCAGAAACTTTC | ||
| >D_CD_83_NDK_ACC_M27323 | ||
| CCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGA | ||
| TGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCAT | ||
| TAACAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAGAATT | ||
| GGGCCTGAAAATCCATATAATACTCCAATATTTGCCATAAAGAAAAAAGA | ||
| CAGTACCAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAA | ||
| CTCAAGATTTCTGGGAGGTTCAATTAGGAATACCGCATCCTGCAGGGCTG | ||
| AAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTCTC | ||
| AGTTCCCTTAGATGAAGATTTTAGGAAATATACCGCATTTACCATACCTA | ||
| GTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTCCCA | ||
| CAGGGATGGAAAGGATCACCGGCAATATTCCAAAGTAGCATGACAAAAAT | ||
| CTTAGAGCCCTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACA | ||
| TGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACA | ||
| AAAATAGAGGAATTAAGAGAACATCTATTGAGGTGGGGATTTACCACACC | ||
| AGATAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAAC | ||
| TCCATCCTGATAAATGGACAGTACAGCCTATAAACCTGCCAGAAAAAGAA | ||
| AGCTGGACTGTCAATGATATACAGAAGTTAGTGGGGAAATTAAACTGGGC | ||
| AAGCCAGATTTATGCAGGAATTAAAGTAAAGCAATTATGTAAACTCCTTA | ||
| GGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAA | ||
| TTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGT | ||
| GTATTATGACCCATCAAAAGACTTAATAGCAGAACTACAGAAACAAGGGG | ||
| ACGGCCAATGGACATACCAAATTTATCAAGAACCATTTAAAAATCTAAAA | ||
| ACAGGAAAGTATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACA | ||
| ATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAAGCATAGTGATATGGG | ||
| GAAAGACTCCTAAATTTAAACTACCCATACAAAAGGAAACATGGGAAACA | ||
| TGGTGGATAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGT | ||
| CAATACCCCTCCTTTAGTAAAATTATGGTACCAGTTAGAGAAGGAACCCA | ||
| TAATAGGAGCAGAAACTTTC | ||
| >D_CD_84_84ZR085_ACC_U88822 | ||
| CCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGA | ||
| TGGCCCAAAAGTTAAACAATGGCCGTTGACAGAAGAAAAAATAAAAGCAT | ||
| TAACAGAAATTTGTACAGATATGGAAAAGGAAGGAAAAATTTCAAGAATT | ||
| GGGCCTGAAAATCCATACAATACTCCAATATTTGCCATAAAGAAAAAAGA | ||
| CAGTACTAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAA | ||
| CTCAAGACTTCTGGGAAGTTCAATTAGGGATACCACATCCTGCAGGATTA | ||
| AAGAAGAAAAAGTCAATAACAGTACTGGATGTGGGCGATGCATATTTTTC | ||
| AATTCCCTTATGTGAAGACTTTAGGAAGTACACTGCATTTACCATACCTA | ||
| GTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTACTTCCA | ||
| CAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGATAAAAAT | ||
| CTTAGAGCCCTTTAGAAAACAAAATCCAGAAGTAGTTATCTATCAATACA | ||
| TGGATGATTTGTATGTAGGATCTGATTTAGAAATAGGACAGCATAGAGCA | ||
| AAAATAGAGAAATTAAGAGAACATCTGTTGAGGTGGGGGCTTACCACACC | ||
| AGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAAC | ||
| TCCATCCTGATAAGTGGACAGTACAGTCTATAACACTGCCAGAGAAAGAA | ||
| AGCTGGACTGTCAATGATATACAGAAGTTAGTGGGAAAATTAAATTGGGC | ||
| AAGCCAGATTTATCCAGGAATTAAAGTAAAGCAATTATGTAAACTCCTTA | ||
| GGGGAACCAAGGCACTAACAGAGGTAATACCACTAACAGAAGAAGCAGAA | ||
| TTAGAACTGGCAGAAAACAGGGAGATTCTAAAGGAACCAATGCATGGAGT | ||
| GTATTATGACCCATCAAAAGACTTAATAGCAGAATTACAGAAACAAGGGC | ||
| AAGGTCAATGGACATATCAAATTTATCAAGAACCATTTAAAAATCTGAAA | ||
| ACAGGAAAGTATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACA | ||
| GTTAACAGAGGCAGTGCAAAAAATAGCCATAGAAAGCATAGTGATATGGG | ||
| GAAAGACTCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAACA | ||
| TGGTGGATAGACTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGT | ||
| CAATACCCCTCCTTTAGTAAAATTATGGTACCAGTTAGAGAAGGAACCCA | ||
| TAATAGGAGCAGAAACTTTC | ||
| >D_UG_94_94UG114_ACC_U88824 | ||
| CCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGGATGGA | ||
| TGGCCCAAAAGTTAAACAATGGCCGTTGACAGAAGAAAAAATAAAAGCAC | ||
| TAATAGAAATTTGTTCAGAACTAGAAAAGGAAGGAAAAATTTCAAAAATT | ||
| GGGCCTGAAAACCCATACAATACTCCAATATTTGCCATAAAGAAAAAAGA | ||
| CAGTACTAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAA | ||
| CTCAAGACTTTTGGGAAGTTCAACTAGGAATACCACATCCTGCAGGGCTA | ||
| AAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGACGCATATTTTTC | ||
| AGTTCCCTTACATGAAGACTTTAGAAAATATACCGCATTCACCATACCTA | ||
| GTACAAACAATGAGACACCAGGAATTAGATATCAGTACAATGTGCTTCCA | ||
| CAAGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAAT | ||
| CTTAGAACCTTTTAGAAAACAAAATCCAGAAATGATTATCTATCAATACA | ||
| TGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAATA | ||
| AAAATAGAGGAATTAAGGGGACACCTCTTGAAGTGGGGATTTACCACACC | ||
| AGACAAAAAGTATCAGAAAGAACCCCCATTTCTTTGGATGGGTTATGAAC | ||
| TCCATCCTGATAAGTGGACAGTACAGCCTATACATCTGCCAGAAAAGGAA | ||
| AGCTGGACTGTCAATGATATACAGAAGTTAGTGGGAAAATTAAATTGGGC | ||
| AAGCCAGATTTATCCAGGAATTAAAGTAAGACAATTATGCAAATGCCTTA | ||
| GGGGAGCCAAAGCACTGACAGAAGTAATACCACTGACAGCAGAAGCAGAA | ||
| TTAGAACTGGCAGAAAACAGGGAAATACTAAAAGAACCAGTACATGGAGC | ||
| GTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAACAAGGGC | ||
| AAGATCAATGGACATATCAAATATATCAAGAACAATATAAAAATCTGAAA | ||
| ACAGGAAAGTATGCGAAAATGAGGGGTACCCACACTAATGATGTAAAACA | ||
| ATTAACAGAGGCAGTGCAGAAAATAGCCCAAGAATGTATAGTAATATGGG | ||
| GAAAGACTCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAACA | ||
| TGGTGGACAGAGTATTGGCAGGCCACCTGGATTCCTGAGTGGGAGTATGT | ||
| CAACACCCCTCCTTTAGTTAAATTATGGTATCAGTTAGAGAAGGAACCCA | ||
| TAGTAGGAGCAGAAACTTTC |
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