WIP: pulsar file collector #474
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: pulsar | |
| on: [push, pull_request] | |
| jobs: | |
| lint: | |
| name: Lint | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| tox-env: [py37-lint, py37-dist, py37-docs] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v3 | |
| with: | |
| python-version: 3.7 | |
| - name: Install tox | |
| run: pip install tox | |
| - name: Run lint | |
| run: tox -e ${{ matrix.tox-env }} | |
| mypy: | |
| name: MyPy | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| include: | |
| - tox-env: py36-mypy | |
| python: 3.6 | |
| - tox-env: py311-mypy | |
| python: 3.11 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install tox | |
| run: pip install tox | |
| - name: Setup pycurl | |
| run: sudo apt update; sudo apt install -y libxml2-dev libxslt1-dev libcurl4-openssl-dev openssh-server | |
| - name: Run tox | |
| run: tox -e ${{ matrix.tox-env }} | |
| test: | |
| name: Run Tests | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| include: | |
| - tox-env: py36-test-ci | |
| python: 3.6 | |
| - tox-env: py36-test-unit | |
| python: 3.6 | |
| - tox-env: py311-test-ci | |
| python: 3.11 | |
| - tox-env: py311-test-unit | |
| python: 3.11 | |
| - tox-env: py37-install_wheel | |
| python: 3.7 | |
| services: | |
| job-files: | |
| image: galaxy/simple-job-files:latest | |
| env: | |
| JOB_FILES_ROOT_DIRECTORY: /tmp | |
| ports: | |
| - '8000:8000' | |
| volumes: | |
| - '/tmp:/tmp:rw' | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install tox | |
| run: pip install tox | |
| - name: Run setup | |
| run: .ci/setup_tests.sh | |
| - name: Run tests | |
| run: . local_env.sh; tox -e ${{ matrix.tox-env }} | |
| env: | |
| PULSAR_TEST_KEY: "test_data/testkey" | |
| PULSAR_TEST_EXTERNAL_JOB_FILES_URL: "http://localhost:8000" | |
| PULSAR_TEST_EXTERNAL_JOB_FILES_DIRECTORY: "/tmp" | |
| TEST_WEBAPP_POST_SHUTDOWN_SLEEP: 1 | |
| ## Can't get the following tests to work - they fall over on the containerized job not being able to | |
| ## connect to the host running the Pulsar server for file transfers in stage out/in. | |
| # tes-test: | |
| # name: Run Tests | |
| # runs-on: ubuntu-20.04 | |
| # strategy: | |
| # matrix: | |
| # include: | |
| # - tox-env: py37-test-funnel | |
| # python: 3.7 | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - uses: actions/setup-python@v3 | |
| # with: | |
| # python-version: ${{ matrix.python }} | |
| # - name: Set up Go 1.x | |
| # uses: actions/setup-go@v2 | |
| # with: | |
| # go-version: ^1.13 | |
| # - name: Pre-fetch required docker containers | |
| # run: docker pull 'galaxy/pulsar-pod-staging:0.15.0.0' && docker pull 'conda/miniconda3' | |
| # - name: Install tox | |
| # run: pip install tox | |
| # - name: Run tests | |
| # run: PULSAR_TEST_INFRASTRUCTURE_HOST="_PLATFORM_AUTO_" FUNNEL_SERVER_TARGET=DEPLOY PULSAR_TES_SERVER_TARGET=http://localhost:8000/ tox -e ${{ matrix.tox-env }} |