Merge pull request #372 from mvdbeek/fix_tool_file_authorization_bina… #473
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| name: pulsar | |
| on: [push, pull_request] | |
| jobs: | |
| lint: | |
| name: Lint | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| tox-env: [py37-lint, py37-dist, py37-docs] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v3 | |
| with: | |
| python-version: 3.7 | |
| - name: Install tox | |
| run: pip install tox | |
| - name: Run lint | |
| run: tox -e ${{ matrix.tox-env }} | |
| mypy: | |
| name: MyPy | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| include: | |
| - tox-env: py36-mypy | |
| python: 3.6 | |
| - tox-env: py311-mypy | |
| python: 3.11 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install tox | |
| run: pip install tox | |
| - name: Setup pycurl | |
| run: sudo apt update; sudo apt install -y libxml2-dev libxslt1-dev libcurl4-openssl-dev openssh-server | |
| - name: Run tox | |
| run: tox -e ${{ matrix.tox-env }} | |
| test: | |
| name: Run Tests | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| include: | |
| - tox-env: py36-test-ci | |
| python: 3.6 | |
| - tox-env: py36-test-unit | |
| python: 3.6 | |
| - tox-env: py311-test-ci | |
| python: 3.11 | |
| - tox-env: py311-test-unit | |
| python: 3.11 | |
| - tox-env: py37-install_wheel | |
| python: 3.7 | |
| services: | |
| job-files: | |
| image: galaxy/simple-job-files:latest | |
| env: | |
| JOB_FILES_ROOT_DIRECTORY: /tmp | |
| ports: | |
| - '8000:8000' | |
| volumes: | |
| - '/tmp:/tmp:rw' | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install tox | |
| run: pip install tox | |
| - name: Run setup | |
| run: .ci/setup_tests.sh | |
| - name: Run tests | |
| run: . local_env.sh; tox -e ${{ matrix.tox-env }} | |
| env: | |
| PULSAR_TEST_KEY: "test_data/testkey" | |
| PULSAR_TEST_EXTERNAL_JOB_FILES_URL: "http://localhost:8000" | |
| PULSAR_TEST_EXTERNAL_JOB_FILES_DIRECTORY: "/tmp" | |
| TEST_WEBAPP_POST_SHUTDOWN_SLEEP: 1 | |
| ## Can't get the following tests to work - they fall over on the containerized job not being able to | |
| ## connect to the host running the Pulsar server for file transfers in stage out/in. | |
| # tes-test: | |
| # name: Run Tests | |
| # runs-on: ubuntu-20.04 | |
| # strategy: | |
| # matrix: | |
| # include: | |
| # - tox-env: py37-test-funnel | |
| # python: 3.7 | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - uses: actions/setup-python@v3 | |
| # with: | |
| # python-version: ${{ matrix.python }} | |
| # - name: Set up Go 1.x | |
| # uses: actions/setup-go@v2 | |
| # with: | |
| # go-version: ^1.13 | |
| # - name: Pre-fetch required docker containers | |
| # run: docker pull 'galaxy/pulsar-pod-staging:0.15.0.0' && docker pull 'conda/miniconda3' | |
| # - name: Install tox | |
| # run: pip install tox | |
| # - name: Run tests | |
| # run: PULSAR_TEST_INFRASTRUCTURE_HOST="_PLATFORM_AUTO_" FUNNEL_SERVER_TARGET=DEPLOY PULSAR_TES_SERVER_TARGET=http://localhost:8000/ tox -e ${{ matrix.tox-env }} |