Merge pull request #19 from bernt-matthias/topic/pipefail

add pipefail
galaxyproject · Jun 6, 2021 · 80d6ba5 · 80d6ba5
2 parents 8fdd9c6 + 74859ef
commit 80d6ba5
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Showing 3 changed files with 6 additions and 3 deletions.
diff --git a/.github/workflows/tools.yaml b/.github/workflows/tools.yaml
@@ -8,7 +8,6 @@ env:
   MAX_CHUNKS: 4
 
 jobs:
-
   setup-pr-tools:
     name: Setup as in PR for tools
     runs-on: ubuntu-latest
@@ -177,11 +176,12 @@ jobs:
         mode: lint
         repository-list: ${{ needs.setup-ci-tools.outputs.repository-list }}
         tool-list: ${{ needs.setup-ci-tools.outputs.tool-list }}
+      continue-on-error: true
     - name: check if all test tools were linted
       run: |
         grep tool1 lint_report.txt
         grep tool2 lint_report.txt
-      
+        grep "ERROR: Error 'HTTPConnectionPool" lint_report.txt
 
   test-tools:
     name: Test testing of tools

diff --git a/planemo_ci_actions.sh b/planemo_ci_actions.sh
@@ -1,5 +1,5 @@
 #!/usr/bin/env bash
-set -ex
+set -exo pipefail
 
 PLANEMO_TEST_OPTIONS=("--database_connection" "$DATABASE_CONNECTION" "--galaxy_source" "https://github.com/$GALAXY_FORK/galaxy" "--galaxy_branch" "$GALAXY_BRANCH" "--galaxy_python_version" "$PYTHON_VERSION")
 PLANEMO_CONTAINER_DEPENDENCIES=("--biocontainers" "--no_dependency_resolution" "--no_conda_auto_init")

diff --git a/test/tools/tool2/tool2.xml b/test/tools/tool2/tool2.xml
@@ -27,6 +27,9 @@
 
 **Input**
 
+This will make the linter test fail.
+
+http://bugus.url/for_test
 
 **Output**