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Use only managed tool data tables on cvmfs (#30)
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mvdbeek authored Oct 6, 2022
1 parent 3554b79 commit 1a25889
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2 changes: 1 addition & 1 deletion planemo_ci_actions.sh
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ set -exo pipefail

PLANEMO_TEST_OPTIONS=("--database_connection" "$DATABASE_CONNECTION" "--galaxy_source" "https://github.com/$GALAXY_FORK/galaxy" "--galaxy_branch" "$GALAXY_BRANCH" "--galaxy_python_version" "$PYTHON_VERSION" --test_timeout "$TEST_TIMEOUT")
PLANEMO_CONTAINER_DEPENDENCIES=("--biocontainers" "--no_dependency_resolution" "--no_conda_auto_init")
PLANEMO_WORKFLOW_OPTIONS=("--shed_tool_conf" "/cvmfs/main.galaxyproject.org/config/shed_tool_conf.xml" "--no_shed_install" "--tool_data_table" "/cvmfs/data.galaxyproject.org/byhand/location/tool_data_table_conf.xml" "--tool_data_table" "/cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml" "--docker_extra_volume" "/cvmfs")
PLANEMO_WORKFLOW_OPTIONS=("--shed_tool_conf" "/cvmfs/main.galaxyproject.org/config/shed_tool_conf.xml" "--no_shed_install" "--tool_data_table" "/cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml" "--docker_extra_volume" "/cvmfs")
read -ra ADDITIONAL_PLANEMO_OPTIONS <<< "$ADDITIONAL_PLANEMO_OPTIONS"


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