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Update microGalaxy list of tools to keep and to exclude #94

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May 16, 2024
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Update microGalaxy list of tools to keep and to exclude
bebatut committed Apr 3, 2024
commit a1b96aa8c3b58301887442d1d1f74209bb78431f
3 changes: 0 additions & 3 deletions data/communities/microgalaxy/tools_to_exclude
Original file line number Diff line number Diff line change
@@ -314,7 +314,6 @@ plotly_regression_performance_plots
Plotting
pmd_fdr
poisson2test
polypolish
predictnls
PrepareForMlocarna
Preprocessing
@@ -410,7 +409,6 @@ seqwish
seurat
seurat
shasta
shorah
short_reads_figure_high_quality_length
short_reads_figure_score
sickle
@@ -469,7 +467,6 @@ TrimNs
trinity
trinotate
trna_prediction
trycycler
tsebra
ucsc_blat
ucsc_custom_track
3 changes: 3 additions & 0 deletions data/communities/microgalaxy/tools_to_keep
Original file line number Diff line number Diff line change
@@ -203,6 +203,7 @@ picrust2
plasflow
plasmidfinder
plasmidspades
polypolish
porechop
prokka
promer
@@ -235,6 +236,7 @@ semibin
seqkit
seqprep
seqsero2
shorah
shovill
sistr_cmd
sklearn
@@ -265,6 +267,7 @@ transtermhp
TreeBest
trim_galore
trimmomatic
trycycler
unicycler
unipept
uniprotxml_downloader