Merge list of tools to keep and to exclude in 1 file and add deprecation status #102
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paulzierep
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May 29, 2024
| 3. (Optional) Create a text file with list of tools to exclude: 1 tool id per row ([example for microbial data analysis](data/microgalaxy/tools_to_exclude)) | ||
| 4. (Optional) Create a text file with list of tools to really keep (already reviewed): 1 tool id per row ([example for microbial data analysis](data/microgalaxy/tools_to_keep)) | ||
| 3. (Optional) Create a TSV (tabular) file with tool status (1 tool suite per row) as 3 columns: | ||
| - ToolShed ids of tool suites (one per line) |
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Is the folder always the ToolShed id ?
…extractor into merge_keep_exclude_list
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Add support for the breaking changes introduced in galaxyproject/galaxy_codex#102
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…ion status (galaxyproject#102) * Merge list of tools to keep and to exclude in 1 file and extract ts filtered tools * Rename keep/exclude to status and add deprecation * Update bin/extract_galaxy_tools.py * revert results files * Fix lint --------- Co-authored-by: paulzierep <[email protected]>
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To fix #95 and #81
Replace
keepandexcludefiles by 1 with 3 columns:This PR also exports 2 TSV with tools