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Modify spoc TS cat and add tool status
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bebatut committed Nov 5, 2024
1 parent 4297e77 commit e185f63
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Showing 6 changed files with 3,575 additions and 187 deletions.
1 change: 1 addition & 0 deletions communities/spoc/metadata/categories
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Single Cell
Spatial Omics
Transcriptomics
100 changes: 100 additions & 0 deletions communities/spoc/metadata/tool_status.tsv
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aegean FALSE FALSE
anndata TRUE FALSE
arriba FALSE FALSE
askor FALSE FALSE
bamparse FALSE FALSE
baredsc TRUE FALSE
bctools FALSE FALSE
brew3r_r FALSE FALSE
cell-types-analysis TRUE FALSE
cemitool TRUE FALSE
cherri FALSE FALSE
chira FALSE FALSE
cite_seq_count TRUE FALSE
cosg TRUE FALSE
cpat FALSE FALSE
cpm_tpm_rpk FALSE FALSE
crosscontamination_barcode_filter TRUE FALSE
cuffcompare FALSE FALSE
cuffdiff FALSE FALSE
cufflinks FALSE FALSE
cuffmerge FALSE FALSE
cuffnorm FALSE FALSE
cuffquant FALSE FALSE
data-hca TRUE FALSE
data-scxa TRUE FALSE
decoupler TRUE FALSE
deg_annotate TRUE FALSE
deseq2 TRUE FALSE
deseq2_normalization TRUE FALSE
dexseq TRUE FALSE
dropletutils TRUE FALSE
edger TRUE FALSE
egsea TRUE FALSE
episcanpy TRUE FALSE
fastq_provider FALSE FALSE
fastq_utils FALSE FALSE
featurecounts FALSE FALSE
fgsea TRUE FALSE
garnett TRUE FALSE
genomic_super_signature FALSE FALSE
gffcompare FALSE FALSE
gsc_filter_cells TRUE FALSE
gsc_filter_genes TRUE FALSE
gsc_gene_expression_correlations TRUE FALSE
gsc_high_dimensions_visualisation TRUE FALSE
gsc_mannwhitney_de TRUE FALSE
gsc_scran_normalize TRUE FALSE
gsc_signature_score TRUE FALSE
heinz TRUE FALSE
infercnv TRUE FALSE
isoformswitchanalyzer FALSE FALSE
kallisto FALSE FALSE
limma_voom FALSE FALSE
masigpro FALSE FALSE
mircounts FALSE FALSE
monocle3 TRUE FALSE
multigsea TRUE FALSE
music_deconvolution TRUE FALSE
nugen_nudup FALSE FALSE
pathifier FALSE FALSE
pizzly FALSE FALSE
psiclass FALSE FALSE
pyscenic TRUE FALSE
qualimap FALSE FALSE
raceid TRUE FALSE
repenrich FALSE FALSE
repenrich2 FALSE FALSE
rgrnastar TRUE FALSE
ribowaltz FALSE FALSE
rsem FALSE FALSE
rseqc FALSE FALSE
ruvseq FALSE FALSE
salmon TRUE FALSE
sashimi_plot FALSE FALSE
sc3 TRUE FALSE
scanpy TRUE FALSE
scater TRUE FALSE
sccaf TRUE FALSE
sceasy TRUE FALSE
schicexplorer TRUE FALSE
scmap TRUE FALSE
scpipe TRUE FALSE
scpred TRUE FALSE
seurat TRUE FALSE
sinto TRUE FALSE
slamdunk FALSE FALSE
sleuth FALSE FALSE
snapatac2 TRUE FALSE
spapros TRUE FALSE
star_fusion FALSE FALSE
stringtie FALSE FALSE
tophat_fusion_post FALSE FALSE
transdecoder FALSE FALSE
trinity FALSE FALSE
trinotate FALSE FALSE
tximport FALSE FALSE
ucsc-cell-browser TRUE FALSE
umi_tools TRUE FALSE
velocyto TRUE FALSE
volcanoplot TRUE FALSE
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