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galaxyproject · Jun 5, 2024 · cb30862 · cb30862
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commit cb30862
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Showing 3 changed files with 41 additions and 41 deletions.
diff --git a/bin/extract_galaxy_tools.py b/bin/extract_galaxy_tools.py
@@ -740,7 +740,7 @@ def reduce_ontology_terms(terms: List, ontology: Any) -> List:
                 tool[f"Tools available on {name}"] = check_tools_on_servers(tool["Galaxy tool ids"], url)
 
             # add all other available servers
-            public_servers_df = pd.read_csv(public_servers)
+            public_servers_df = pd.read_csv(public_servers, sep="\t")
             for index, row in public_servers_df.iterrows():
                 name = row["name"]
 

diff --git a/bin/get_public_galaxy_servers.py b/bin/get_public_galaxy_servers.py
@@ -48,7 +48,7 @@ def get_public_galaxy_servers(output: str) -> None:
         s = pd.Series(to_process)
         s.index.name = "name"
         s.name = "url"
-        s.to_csv(output)
+        s.to_csv(output, sep="\t")
 
 
 if __name__ == "__main__":

diff --git a/data/available_public_servers.csv b/data/available_public_servers.csv
@@ -1,39 +1,39 @@
-name,url
-ANASTASIA,http://motherbox.chemeng.ntua.gr/anastasia_dev/
-APOSTL,http://apostl.moffitt.org/
-ARGs-OAP,http://smile.hku.hk/SARGs
-BF2I-MAP,http://bf2i-galaxy.insa-lyon.fr:8080/
-BioBix,http://galaxy.ugent.be/
-CIRM-CFBP,https://iris.angers.inra.fr/galaxypub-cfbp
-Center for Phage Technology (CPT),https://cpt.tamu.edu/galaxy-public/
-ChemFlow,https://vm-chemflow-francegrille.eu/
-Coloc-stats,https://hyperbrowser.uio.no/coloc-stats
-CorGAT,http://corgat.cloud.ba.infn.it/galaxy
-CropGalaxy,http://cropgalaxy.excellenceinbreeding.org/
-Dintor,http://dintor.eurac.edu/
-FreeBioinfo,http://www.freebioinfo.org/
-GASLINI,http://igg.cloud.ba.infn.it/galaxy
-Galaxy@AuBi,https://galaxy.mesocentre.uca.fr
-Galaxy@Pasteur,https://galaxy.pasteur.fr/
-GalaxyTrakr,https://galaxytrakr.org/
-Genomic Hyperbrowser,http://hyperbrowser.uio.no/hb/
-GigaGalaxy,http://gigagalaxy.net/
-HyPhy HIV NGS Tools,https://galaxy.hyphy.org/
-IPK Galaxy Blast Suite,https://galaxy-web.ipk-gatersleben.de
-ImmPort Galaxy,https://www.immportgalaxy.org/
-InteractoMIX,http://galaxy.interactomix.com/
-MISSISSIPPI,https://mississippi.sorbonne-universite.fr
-Mandoiu Lab,https://neo.engr.uconn.edu/
-MiModD NacreousMap,http://mapping-by-sequencing.vm.uni-freiburg.de:8080/
-Oqtans,http://galaxy.inf.ethz.ch
-Palfinder,https://palfinder.ls.manchester.ac.uk/
-PepSimili,http://pepsimili.e-nios.com:8080/
-PhagePromotor,https://galaxy.bio.di.uminho.pt/
-Protologger,http://protologger.de/
-UseGalaxy.be,https://usegalaxy.be/
-UseGalaxy.cz,https://usegalaxy.cz/
-UseGalaxy.eu,https://usegalaxy.eu
-UseGalaxy.fr,https://usegalaxy.fr/
-UseGalaxy.no,https://usegalaxy.no/
-UseGalaxy.org (Main),https://usegalaxy.org
-UseGalaxy.org.au,https://usegalaxy.org.au
+name	url
+ANASTASIA	http://motherbox.chemeng.ntua.gr/anastasia_dev/
+APOSTL	http://apostl.moffitt.org/
+ARGs-OAP	http://smile.hku.hk/SARGs
+BF2I-MAP	http://bf2i-galaxy.insa-lyon.fr:8080/
+BioBix	http://galaxy.ugent.be/
+CIRM-CFBP	https://iris.angers.inra.fr/galaxypub-cfbp
+Center for Phage Technology (CPT)	https://cpt.tamu.edu/galaxy-public/
+ChemFlow	https://vm-chemflow-francegrille.eu/
+Coloc-stats	https://hyperbrowser.uio.no/coloc-stats
+CorGAT	http://corgat.cloud.ba.infn.it/galaxy
+CropGalaxy	http://cropgalaxy.excellenceinbreeding.org/
+Dintor	http://dintor.eurac.edu/
+FreeBioinfo	http://www.freebioinfo.org/
+GASLINI	http://igg.cloud.ba.infn.it/galaxy
+Galaxy@AuBi	https://galaxy.mesocentre.uca.fr
+Galaxy@Pasteur	https://galaxy.pasteur.fr/
+GalaxyTrakr	https://galaxytrakr.org/
+Genomic Hyperbrowser	http://hyperbrowser.uio.no/hb/
+GigaGalaxy	http://gigagalaxy.net/
+HyPhy HIV NGS Tools	https://galaxy.hyphy.org/
+IPK Galaxy Blast Suite	https://galaxy-web.ipk-gatersleben.de
+ImmPort Galaxy	https://www.immportgalaxy.org/
+InteractoMIX	http://galaxy.interactomix.com/
+MISSISSIPPI	https://mississippi.sorbonne-universite.fr
+Mandoiu Lab	https://neo.engr.uconn.edu/
+MiModD NacreousMap	http://mapping-by-sequencing.vm.uni-freiburg.de:8080/
+Oqtans	http://galaxy.inf.ethz.ch
+Palfinder	https://palfinder.ls.manchester.ac.uk/
+PepSimili	http://pepsimili.e-nios.com:8080/
+PhagePromotor	https://galaxy.bio.di.uminho.pt/
+Protologger	http://protologger.de/
+UseGalaxy.be	https://usegalaxy.be/
+UseGalaxy.cz	https://usegalaxy.cz/
+UseGalaxy.eu	https://usegalaxy.eu
+UseGalaxy.fr	https://usegalaxy.fr/
+UseGalaxy.no	https://usegalaxy.no/
+UseGalaxy.org (Main)	https://usegalaxy.org
+UseGalaxy.org.au	https://usegalaxy.org.au