Snake case argument names

galaxyproject · May 24, 2024 · 88fb450 · 88fb450
1 parent 7945f26
commit 88fb450
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Showing 4 changed files with 5 additions and 5 deletions.
diff --git a/bin/extract_all_tools.sh b/bin/extract_all_tools.sh
@@ -5,7 +5,7 @@ mkdir -p 'results/'
 python bin/extract_galaxy_tools.py \
         extractools \
         --api $GITHUB_API_KEY \
-        --all_tools 'results/all_tools.tsv'
+        --all-tools 'results/all_tools.tsv'
 
 python bin/create_interactive_table.py \
         --table "results/all_tools.tsv" \

diff --git a/bin/extract_all_tools_test.sh b/bin/extract_all_tools_test.sh
@@ -7,7 +7,7 @@ output="results/${1}_tools.tsv"
 python bin/extract_galaxy_tools.py \
         extractools \
         --api $GITHUB_API_KEY \
-        --all_tools $output \
-        --planemorepository $1 \
+        --all-tools $output \
+        --planemo-repository-list $1 \
         --test
 
diff --git a/bin/extract_galaxy_tools.py b/bin/extract_galaxy_tools.py
@@ -647,7 +647,7 @@ def filter_tools(
         help="Filepath to TSV with all extracted tools, generated by extractools command",
     )
     filtertools.add_argument(
-        "--filtered_tools",
+        "--filtered-tools",
         "-f",
         required=True,
         help="Filepath to TSV with filtered tools",

diff --git a/bin/get_community_tools.sh b/bin/get_community_tools.sh
@@ -12,7 +12,7 @@ for com_data_fp in data/communities/* ; do
                 python bin/extract_galaxy_tools.py \
                         filtertools \
                         --tools "results/all_tools.tsv" \
-                        --filtered_tools "results/$community/tools.tsv" \
+                        --filtered-tools "results/$community/tools.tsv" \
                         --categories "data/communities/$community/categories" \
                         --exclude "data/communities/$community/tools_to_exclude" \
                         --keep "data/communities/$community/tools_to_keep"