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update community
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paulzierep committed Jan 24, 2024
1 parent 9410a39 commit 84ae315
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143 changes: 143 additions & 0 deletions results/imaging/index.html
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<script src="https://code.jquery.com/jquery-3.7.0.js"></script>
<script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
<script src="https://cdn.datatables.net/searchbuilder/1.6.0/js/dataTables.searchBuilder.min.js"></script>
<script src="https://cdn.datatables.net/datetime/1.5.1/js/dataTables.dateTime.min.js"></script>

<script src="https://cdn.datatables.net/responsive/2.5.0/js/dataTables.responsive.min.js"></script>

<link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/responsive/2.2.3/css/responsive.dataTables.min.css">

<link rel="stylesheet" href="https://cdn.datatables.net/1.13.6/css/jquery.dataTables.min.css">
<link rel="stylesheet" href="https://cdn.datatables.net/searchbuilder/1.6.0/css/searchBuilder.dataTables.min.css">
<link rel="stylesheet" href="https://cdn.datatables.net/datetime/1.5.1/css/dataTables.dateTime.min.css">

<link rel="stylesheet" type="text/css" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.4/css/bootstrap.min.css" />
<script type="text/javascript" src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.4/js/bootstrap.min.js"></script>

<style type="text/css">
.tooltip {
font-family: Georgia;
font-size: 18px;
}
.tooltip .tooltip-inner {
background-color: #00FFFF;
color: #000000;
min-width: 400px;
}
</style>

<script>
$(document).ready(function() {
$('#dataframe').DataTable( {
"sScrollX": "100%",
"dom": "Qlfrtip",

responsive: {
details: {
type: 'column'
}
},
"bAutoWidth": false,
columnDefs: [ {
className: 'control',
orderable: false,
targets: [ 0 ],
width: 100,
},
{ type: 'natural', targets: 1 } // allow normal sorting
],

});
});
</script>

<div class="display nowrap" style="width:80%" width="100%">

<table class="dataframe display nowrap" id="dataframe">
<thead>
<tr style="text-align: right;">
<th>Expand</th>
<th>Galaxy wrapper id</th>
<th>Galaxy wrapper version</th>
<th>Conda version</th>
<th>Conda id</th>
<th>Status</th>
<th>bio.tool id</th>
<th>bio.tool name</th>
<th>EDAM operation</th>
<th>EDAM topic</th>
<th>Description</th>
<th>bio.tool description</th>
<th>Status</th>
<th>Source</th>
<th>ToolShed categories</th>
<th>ToolShed id</th>
<th>Galaxy wrapper owner</th>
<th>Galaxy wrapper source</th>
</tr>
</thead>
<tbody>
<tr>
<td></td>
<td>imagecoordinates_flipaxis</td>
<td>0.1-2</td>
<td></td>
<td>pandas</td>
<td>To update</td>
<td>galaxy_image_analysis</td>
<td>Galaxy Image Analysis</td>
<td>Image analysis</td>
<td>Imaging, Bioinformatics</td>
<td>Flip coordinate axes</td>
<td>Developed within the Biomedical Computer Vision (BMCV) Group Heidelberg.</td>
<td>To update</td>
<td>https://github.com/bmcv</td>
<td>Imaging</td>
<td>imagecoordinates_flipaxis</td>
<td>imgteam</td>
<td>https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/imagecoordinates_flipaxis/</td>
</tr>
<tr>
<td></td>
<td>qupath_roi_splitter</td>
<td>0.1.0+galaxy1</td>
<td></td>
<td>geojson</td>
<td>To update</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td>Split ROI coordinates of QuPath TMA annotation by cell type</td>
<td></td>
<td>To update</td>
<td>https://github.com/npinter/ROIsplitter</td>
<td>Imaging</td>
<td>qupath_roi_splitter</td>
<td>galaxyp</td>
<td>hhttps://github.com/npinter/ROIsplitter</td>
</tr>
<tr>
<td></td>
<td>spyboat</td>
<td>0.1.2</td>
<td></td>
<td>spyboat</td>
<td>To update</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td>Wavelet analysis for 3d-image stacks</td>
<td></td>
<td>To update</td>
<td>http://github.com/tensionhead/spyboat</td>
<td>Imaging, Graphics</td>
<td>spyboat</td>
<td>iuc</td>
<td>https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat</td>
</tr>
</tbody>
</table>

</div>
4 changes: 4 additions & 0 deletions results/imaging/tools.tsv
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Galaxy wrapper id https://usegalaxy.eu usage https://usegalaxy.eu usage Galaxy tool ids Description bio.tool id bio.tool name bio.tool description EDAM operation EDAM topic Status Source ToolShed categories ToolShed id Galaxy wrapper owner Galaxy wrapper source Galaxy wrapper version Conda id Conda version https://usegalaxy.org https://usegalaxy.org.au https://usegalaxy.eu Reviewed To keep
imagecoordinates_flipaxis 7 7 imagecoordinates_flipaxis Flip coordinate axes galaxy_image_analysis Galaxy Image Analysis Developed within the Biomedical Computer Vision (BMCV) Group Heidelberg. Image analysis Imaging, Bioinformatics To update https://github.com/bmcv Imaging imagecoordinates_flipaxis imgteam https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/imagecoordinates_flipaxis/ 0.1-2 pandas (0/1) (0/1) (1/1) False
qupath_roi_splitter 5 5 qupath_roi_splitter Split ROI coordinates of QuPath TMA annotation by cell type To update https://github.com/npinter/ROIsplitter Imaging qupath_roi_splitter galaxyp hhttps://github.com/npinter/ROIsplitter 0.1.0+galaxy1 geojson (0/1) (0/1) (1/1) False
spyboat 1 1 spyboat Wavelet analysis for 3d-image stacks To update http://github.com/tensionhead/spyboat Imaging, Graphics spyboat iuc https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat 0.1.2 spyboat (0/1) (0/1) (1/1) False
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