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Merge pull request #75 from supernord/main
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Add GTN tutorials
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bebatut authored Mar 14, 2024
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30 changes: 30 additions & 0 deletions docs/publications/BioHackrXiv/paper.bib
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Expand Up @@ -176,3 +176,33 @@ @article{blankenberg2014dissemination
publisher={Springer}
}

@misc{dev-community-tool-table,
author = {Bérénice Batut},
title = {Creation of an interactive Galaxy tools table for your community (Galaxy Training Materials)},
year = {2024},
url = {https://training.galaxyproject.org/training-material/topics/dev/tutorials/community-tool-table/tutorial.html},
note = {Online; accessed Thu Mar 14 2024}
}

@article{Hiltemann_2023,
doi = {10.1371/journal.pcbi.1010752},
url = {https://doi.org/10.1371%2Fjournal.pcbi.1010752},
year = 2023,
month = {jan},
publisher = {Public Library of Science ({PLoS})},
volume = {19},
number = {1},
pages = {e1010752},
author = {Saskia Hiltemann and Helena Rasche and Simon Gladman and Hans-Rudolf Hotz and Delphine Larivi{\`{e}}re and Daniel Blankenberg and Pratik D. Jagtap and Thomas Wollmann and Anthony Bretaudeau and Nadia Gou{\'{e}} and Timothy J. Griffin and Coline Royaux and Yvan Le Bras and Subina Mehta and Anna Syme and Frederik Coppens and Bert Droesbeke and Nicola Soranzo and Wendi Bacon and Fotis Psomopoulos and Crist{\'{o}}bal Gallardo-Alba and John Davis and Melanie Christine Föll and Matthias Fahrner and Maria A. Doyle and Beatriz Serrano-Solano and Anne Claire Fouilloux and Peter van Heusden and Wolfgang Maier and Dave Clements and Florian Heyl and Björn Grüning and B{\'{e}}r{\'{e}}nice Batut and},
editor = {Francis Ouellette},
title = {Galaxy Training: A powerful framework for teaching!},
journal = {PLoS Comput Biol} Computational Biology}
}
@misc{dev-tool-annotation,
author = {Bérénice Batut and Johan Gustafsson and Paul Zierep},
title = {Adding and updating best practice metadata for Galaxy tools using the bio.tools registry (Galaxy Training Materials)},
year = {2024},
url = {https://training.galaxyproject.org/training-material/topics/dev/tutorials/tool-annotation/tutorial.html},
note = {Online; accessed Thu Mar 14 2024}
}
6 changes: 5 additions & 1 deletion docs/publications/BioHackrXiv/paper.md
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Expand Up @@ -189,7 +189,11 @@ A rerun of the Galaxy tool metadata extractor pipeline collected the additional

## Training materials and updates to standards

To provide the Galaxy research communities with simple and straightforward guide to annotating their respective tool stacks, the described annotation workflow is currently being transformed into a GTN tutorial.
To provide the Galaxy research communities with simple and straightforward guide to annotating their respective tool stacks, the described work has been converted into two GTN tutorials:

- [Adding and updating best practice metadata for Galaxy tools using the bio.tools registry](https://gxy.io/GTN:T00421) [@citeAs:dev-tool-annotation]
- [Creation of an interactive Galaxy tools table for your community](https://training.galaxyproject.org/training-material/topics/dev/tutorials/community-tool-table/tutorial.html) [@citeAs:dev-community-tool-table]

The guidelines created were also used to update the [best practices for creating Galaxy tools of the IUC repository](https://galaxy-iuc-standards.readthedocs.io/en/latest/best_practices/tool_xml.html).


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