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Merge pull request #255 from EngyNasr/microGalaxyLabUpdates
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Microgalaxy lab updates
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bebatut authored Dec 17, 2024
2 parents 698bdd1 + 1c6fac3 commit 2acf56e
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3 changes: 2 additions & 1 deletion communities/microgalaxy/lab/CONTRIBUTORS
Original file line number Diff line number Diff line change
@@ -1,3 +1,4 @@
# If GitHub username, name and avatar will be fetched and displayed
bebatut
zierep
zierep
EngyNasr
35 changes: 17 additions & 18 deletions communities/microgalaxy/lab/base.yml
Original file line number Diff line number Diff line change
@@ -1,43 +1,39 @@
# Request this as a webpage with:
# https://site.usegalaxy.org.au/lab/export?content_root=https://raw.githubusercontent.com/nomadscientist/galaxy_codex/subdomain_unification/subdomains/singlecell/base.yml
# https://site.usegalaxy.org.au/lab/export?content_root=https://raw.githubusercontent.com/nomadscientist/galaxy_codex/tree/main/communities/microgalaxy/base.yml

# -----------------------------------------------------------------------------
# Use these variables in HTML templates like:
# "Welcome to the Galaxy {{ site_name }} {{ lab_name }}"
# To make the content more generic and reusable across sites

# These will be rendered like "Welcome to the Galaxy {{ site_name }} {{ lab_name }}!"
site_name: Australia
site_name: European
lab_name: microGalaxy Lab
analysis_name: microGalaxy
nationality: Australian
nationality: European

# Used for rendering tool/workflow links. Trailing '/' will be removed.
galaxy_base_url: https://singlecell.usegalaxy.org
subdomain: singlecell
root_domain: usegalaxy.org
galaxy_base_url: https://microgalaxy.usegalaxy.eu
subdomain: microGalaxy
root_domain: usegalaxy.eu

# This will enable a feedback form on the webpage:
# feedback_email: [email protected]

support_url: https://help.galaxyproject.org
# quota_request_url: https://help.galaxyproject.org
quota_request_url: https://help.galaxyproject.org
data_policy_url: https://usegalaxy.org/static/terms.html
terms_url: https://usegalaxy.org/static/terms.html

help_links:
- title: General Galaxy support
url: https://galaxyproject.org/support/
- title: Single Cell help forum
url: https://help.galaxyproject.org/tag/single-cell
- title: General Galaxy help forum
url: https://help.galaxyproject.org
- title: Galaxy Training Network Slack workspace
url: https://join.slack.com/t/gtnsmrgsbord/shared_invite/zt-2llyx6p8j-LmpEIsJu0t4MQkBctkN8qg
- title: Single cell Slack channel (#single-cell-users)
url: https://gtnsmrgsbord.slack.com/archives/C06PBRR40D7
- title: Single cell user community chat room (Same channel but using Matrix/Element)
url: https://matrix.to/#/#Galaxy-Training-Network_galaxy-single-cell:gitter.im
- title: microGalaxy user community chat room (Same channel but using Matrix/Element)
url: https://matrix.to/#/#galaxyproject_microGalaxy:gitter.im
- title: Galaxy Training Community chat
url: https://matrix.to/#/#Galaxy-Training-Network_Lobby:gitter.im
- title: Usegalaxy.org chat
Expand All @@ -49,7 +45,7 @@ conclusion_extra_md: ""
# -----------------------------------------------------------------------------
# Custom content relative to this file URL

header_logo: static/logo_single_cell.svg
header_logo: static/microgalaxy-logo.png
custom_css: static/custom.css
intro_md: templates/intro.html
conclusion_md: templates/conclusion.html
Expand All @@ -61,9 +57,12 @@ footer_md: templates/footer.html
# 1. Relative to this file URL
# 2. Full URL to fetch globally centralized content
sections:
- sections/1_beginner.yml
- sections/3_advanced.yml
- sections/4_community.yml
- sections/5_tools.yml
- sections/1_data_import_and_preparation.yml
- sections/2_microbial_isolates.yml
- sections/3_microbiome.yml
- sections/4_tools.yml
- sections/5_workflows.yml
- sections/6_support_and_help.yml
- sections/7_community.yml

# -----------------------------------------------------------------------------
233 changes: 0 additions & 233 deletions communities/microgalaxy/lab/sections/1_beginner.yml

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