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results/microgalaxy/index.html

@@ -1765,13 +1765,13 @@
       <td></td>
       <td>abritamr</td>
       <td>A pipeline for running AMRfinderPlus and collating results into functional classes</td>
+      <td>abritamr</td>
       <td></td>
-      <td></td>
-      <td></td>
-      <td></td>
-      <td></td>
-      <td></td>
-      <td>Up-to-date</td>
+      <td>abriTAMR</td>
+      <td>an AMR gene detection pipeline that runs AMRFinderPlus on a single (or list ) of given isolates and collates the results into a table, separating genes identified into functionally relevant groups.</td>
+      <td>Antimicrobial resistance prediction</td>
+      <td>Microbiology, Public health and epidemiology, Infectious disease</td>
+      <td>To update</td>
       <td>https://zenodo.org/record/7370628</td>
       <td>Sequence Analysis</td>
       <td>abritamr</td>
@@ -1780,7 +1780,7 @@
       <td>https://github.com/galaxyproject/tools-iuc/tree/main/tools/abritamr</td>
       <td>1.0.14</td>
       <td>abritamr</td>
-      <td>1.0.14</td>
+      <td>1.0.17</td>
       <td>(0/1)</td>
       <td>(0/1)</td>
       <td>(0/1)</td>
@@ -2851,14 +2851,14 @@
       <td></td>
       <td></td>
       <td></td>
-      <td>To update</td>
+      <td>Up-to-date</td>
       <td>https://github.com/OpenGene/fastp</td>
       <td>Sequence Analysis</td>
       <td>fastp</td>
       <td>iuc</td>
       <td>https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastp</td>
       <td>https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastp</td>
-      <td></td>
+      <td>0.23.4</td>
       <td>fastp</td>
       <td>0.23.4</td>
       <td>(1/1)</td>
@@ -3256,14 +3256,14 @@
       <td>Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure</td>
       <td>Data handling, Antimicrobial resistance prediction, Parsing</td>
       <td>Public health and epidemiology, Microbiology, Bioinformatics</td>
-      <td>To update</td>
+      <td>Up-to-date</td>
       <td>https://github.com/pha4ge/hAMRonization</td>
       <td>Sequence Analysis</td>
       <td>hamronization</td>
       <td>iuc</td>
       <td>https://github.com/galaxyproject/tools-iuc/tree/master/tools/hamronization</td>
       <td>https://github.com/galaxyproject/tools-iuc/tree/main/tools/hamronization</td>
-      <td>1.0.3</td>
+      <td>1.1.4</td>
       <td>hamronization</td>
       <td>1.1.4</td>
       <td>(0/2)</td>
@@ -3400,7 +3400,7 @@
       <td>https://github.com/galaxyproject/tools-iuc/tree/main/tools/hyphy</td>
       <td>2.5.47</td>
       <td>hyphy</td>
-      <td>2.5.59</td>
+      <td>2.5.60</td>
       <td>(17/17)</td>
       <td>(2/17)</td>
       <td>(17/17)</td>
@@ -3535,7 +3535,7 @@
       <td>https://github.com/galaxyproject/tools-iuc/tree/main/tools/interproscan</td>
       <td>5.59-91.0</td>
       <td>interproscan</td>
-      <td></td>
+      <td>5.59_91.0</td>
       <td>(1/1)</td>
       <td>(1/1)</td>
       <td>(1/1)</td>
@@ -4552,7 +4552,7 @@
       <td></td>
       <td></td>
       <td></td>
-      <td>Up-to-date</td>
+      <td>To update</td>
       <td>https://github.com/lh3/miniprot</td>
       <td>Sequence Analysis</td>
       <td></td>
@@ -4561,7 +4561,7 @@
       <td>https://github.com/galaxyproject/tools-iuc/tree/main/tools/miniprot</td>
       <td>0.12</td>
       <td>miniprot</td>
-      <td>0.12</td>
+      <td>0.13</td>
       <td>(0/2)</td>
       <td>(0/2)</td>
       <td>(2/2)</td>
@@ -4762,20 +4762,20 @@
       <td>2195.0</td>
       <td>nanoplot</td>
       <td>Plotting tool for long read sequencing data and alignments</td>
+      <td>nanoplot</td>
       <td></td>
-      <td></td>
-      <td></td>
-      <td></td>
-      <td></td>
-      <td></td>
-      <td>To update</td>
+      <td>NanoPlot</td>
+      <td>NanoPlot is a tool with various visualizations of sequencing data in bam, cram, fastq, fasta or platform-specific TSV summaries, mainly intended for long-read sequencing from Oxford Nanopore Technologies and Pacific Biosciences</td>
+      <td>Scatter plot plotting, Box-Whisker plot plotting</td>
+      <td>Genomics</td>
+      <td>Up-to-date</td>
       <td>https://github.com/wdecoster/NanoPlot</td>
       <td>Visualization</td>
       <td>nanoplot</td>
       <td>iuc</td>
       <td>https://github.com/galaxyproject/tools-iuc/tree/master/tools/nanoplot/</td>
       <td>https://github.com/galaxyproject/tools-iuc/tree/main/tools/nanoplot</td>
-      <td>1.41.0</td>
+      <td>1.42.0</td>
       <td>nanoplot</td>
       <td>1.42.0</td>
       <td>(1/1)</td>
@@ -6348,6 +6348,33 @@
       <td>(1/1)</td>
       <td>(1/1)</td>
     </tr>
+    <tr>
+      <td></td>
+      <td>virAnnot</td>
+      <td></td>
+      <td></td>
+      <td>virannot_blast2tsv, virannot_otu, virAnnot_rps2tsv</td>
+      <td>virAnnot wrappers</td>
+      <td></td>
+      <td></td>
+      <td></td>
+      <td></td>
+      <td></td>
+      <td></td>
+      <td>To update</td>
+      <td>https://github.com/marieBvr/virAnnot</td>
+      <td>Metagenomics</td>
+      <td>virannot</td>
+      <td>iuc</td>
+      <td>https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot</td>
+      <td>https://github.com/galaxyproject/tools-iuc/tree/main/tools/virAnnot</td>
+      <td>1.0.0+galaxy0</td>
+      <td>biopython</td>
+      <td>1.70</td>
+      <td>(0/3)</td>
+      <td>(0/3)</td>
+      <td>(0/3)</td>
+    </tr>
     <tr>
       <td></td>
       <td>vsearch</td>