Add scripts to extract workflows from WorkflowHub and UseGalaxy servers #231
Workflow file for this run
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| name: Run tests | |
| on: [push, pull_request] | |
| jobs: | |
| test-tools: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python-version: ['3.11'] | |
| environment: fetch-tools | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install requirement | |
| run: python -m pip install -r requirements.txt | |
| - name: Tool extraction | |
| run: | | |
| bash sources/bin/extract_all_tools.sh test | |
| env: | |
| GITHUB_API_KEY: ${{ secrets.GH_API_TOKEN }} | |
| - name: Tool filter | |
| run: | | |
| bash sources/bin/get_community_tools.sh test | |
| - name: Create interactive table and wordcloud | |
| run: | | |
| bash sources/bin/format_tools.sh | |
| test-tutorials: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python-version: ['3.11'] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install requirement | |
| run: python -m pip install -r requirements.txt | |
| - name: Tutorial extraction | |
| run: | | |
| bash sources/bin/extract_all_tutorials.sh test | |
| env: | |
| PLAUSIBLE_API_KEY: ${{ secrets.PLAUSIBLE_API_TOKEN }} | |
| - name: Tutorial filtering | |
| run: | | |
| bash sources/bin/get_community_tutorials.sh test | |
| test-workflows: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python-version: ['3.11'] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install requirement | |
| run: python -m pip install -r requirements.txt | |
| - name: Workflow extraction | |
| run: | | |
| bash sources/bin/extract_all_workflows.sh test | |
| - name: Workflow filtering | |
| run: | | |
| bash sources/bin/get_community_workflows.sh test |