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Add unit test; adjust tests to account for order-by columns
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@@ -356,7 +356,22 @@ def test_collections_in_library_folders(self): | |
# assert len(loaded_dataset_collection.datasets) == 2 | ||
# assert loaded_dataset_collection.collection_type == "pair" | ||
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# TODO breakup this test into separate tests that test the model's public attributes, not the internal query-building logic | ||
def test_dataset_action_tuples(self): | ||
u = model.User(email="foo", password="foo") | ||
h1 = model.History(user=u) | ||
hda1 = model.HistoryDatasetAssociation(history=h1, create_dataset=True, sa_session=self.model.session) | ||
hda2 = model.HistoryDatasetAssociation(history=h1, create_dataset=True, sa_session=self.model.session) | ||
r1 = model.Role() | ||
dp1 = model.DatasetPermissions(action="action1", dataset=hda1.dataset, role=r1) | ||
dp2 = model.DatasetPermissions(action=None, dataset=hda1.dataset, role=r1) | ||
dp3 = model.DatasetPermissions(action="action3", dataset=hda1.dataset, role=r1) | ||
c1 = model.DatasetCollection(collection_type="type1") | ||
dce1 = model.DatasetCollectionElement(collection=c1, element=hda1) | ||
dce2 = model.DatasetCollectionElement(collection=c1, element=hda2) | ||
self.model.session.add_all([u, h1, hda1, hda2, r1, dp1, dp2, dp3, c1, dce1, dce2]) | ||
self.model.session.flush() | ||
assert c1.dataset_action_tuples == [("action1", r1.id), ("action3", r1.id)] | ||
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def test_nested_collection_attributes(self): | ||
u = model.User(email="[email protected]", password="password") | ||
h1 = model.History(name="History 1", user=u) | ||
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@@ -399,25 +414,25 @@ def test_nested_collection_attributes(self): | |
) | ||
result = self.model.session.execute(stmt).all() | ||
assert [(r._fields) for r in result] == [ | ||
("element_identifier_0", "element_identifier_1", "extension", "state"), | ||
("element_identifier_0", "element_identifier_1", "extension", "state"), | ||
("element_identifier_0", "element_identifier_1", "extension", "state", "element_index", "element_index_1"), | ||
("element_identifier_0", "element_identifier_1", "extension", "state", "element_index", "element_index_1"), | ||
] | ||
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stmt = c2._build_nested_collection_attributes_stmt( | ||
element_attributes=("element_identifier",), hda_attributes=("extension",), dataset_attributes=("state",) | ||
) | ||
result = self.model.session.execute(stmt).all() | ||
assert result == [("inner_list", "forward", "bam", "new"), ("inner_list", "reverse", "txt", "new")] | ||
assert result == [("inner_list", "forward", "bam", "new", 0, 0), ("inner_list", "reverse", "txt", "new", 0, 1)] | ||
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stmt = c2._build_nested_collection_attributes_stmt(return_entities=(model.HistoryDatasetAssociation,)) | ||
result = self.model.session.scalars(stmt).all() | ||
assert result == [d1, d2] | ||
result = self.model.session.execute(stmt).all() | ||
assert result == [(d1, 0, 0), (d2, 0, 1)] | ||
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stmt = c2._build_nested_collection_attributes_stmt( | ||
return_entities=(model.HistoryDatasetAssociation, model.Dataset) | ||
) | ||
result = self.model.session.execute(stmt).all() | ||
assert result == [(d1, d1.dataset), (d2, d2.dataset)] | ||
assert result == [(d1, d1.dataset, 0, 0), (d2, d2.dataset, 0, 1)] | ||
# Assert properties that use _get_nested_collection_attributes return correct content | ||
assert c2.dataset_instances == [d1, d2] | ||
assert c2.dataset_elements == [dce1, dce2] | ||
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@@ -439,12 +454,11 @@ def test_nested_collection_attributes(self): | |
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stmt = c4._build_nested_collection_attributes_stmt(element_attributes=("element_identifier",)) | ||
result = self.model.session.execute(stmt).all() | ||
assert result == [("outer_list", "inner_list", "forward"), ("outer_list", "inner_list", "reverse")] | ||
assert c4.dataset_elements == [dce1, dce2] | ||
assert c4.element_identifiers_extensions_and_paths == [ | ||
(("outer_list", "inner_list", "forward"), "bam", "mock_dataset_14.dat"), | ||
(("outer_list", "inner_list", "reverse"), "txt", "mock_dataset_14.dat"), | ||
assert result == [ | ||
("outer_list", "inner_list", "forward", 0, 0, 0), | ||
("outer_list", "inner_list", "reverse", 0, 0, 1), | ||
] | ||
assert c4.dataset_elements == [dce1, dce2] | ||
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def test_dataset_dbkeys_and_extensions_summary(self): | ||
u = model.User(email="[email protected]", password="password") | ||
|