Support secrets in tool requirements #7044
Workflow file for this run
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name: Test Galaxy packages for Pulsar | |
on: | |
push: | |
paths-ignore: | |
- 'client/**' | |
- 'doc/**' | |
- 'lib/galaxy_test/selenium/**' | |
pull_request: | |
paths-ignore: | |
- 'client/**' | |
- 'doc/**' | |
- 'lib/galaxy_test/selenium/**' | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
test: | |
name: Test | |
runs-on: ubuntu-22.04 # Python 3.7 is not available via setup-python on ubuntu >=24.04 | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ['3.7'] # don't upgrade, see https://github.com/galaxyproject/galaxy/pull/16649 | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
path: 'galaxy root' | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache: 'pip' | |
cache-dependency-path: 'galaxy root/requirements.txt' | |
- name: Install Apptainer's singularity | |
uses: eWaterCycle/setup-apptainer@v2 | |
- name: Install ffmpeg | |
run: sudo apt-get update && sudo apt-get -y install ffmpeg | |
- name: Install tox | |
run: pip install tox | |
- name: Run tests | |
run: tox -e test_galaxy_packages_for_pulsar | |
working-directory: 'galaxy root' |