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feat: rename genome list and update to use data from ncbi (#177) #178

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@hunterckx hunterckx commented Nov 17, 2024

  • Tags are not included because they're associated with organisms, not genomes -- Organisms are now included
  • The UCSC Browser URLs of uncertain accuracy are still included -- I believe we've confirmed that our current matching method is accurate



def add_gene_model_url(genomes_df: pd.DataFrame):
return pd.concat([genomes_df, genomes_df["accession"].apply(_id_to_gene_model_url).rename("geneModelUrl")], axis="columns")
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I've added gene model URL -- not certain whether accession is appropriate for getting that

@NoopDog
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NoopDog commented Dec 5, 2024

@hunterckx can you rebase this on main please?

@hunterckx hunterckx force-pushed the hunter/177-new-genomes-list branch from 37a5cef to df266de Compare December 5, 2024 07:33
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